Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0088
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   3.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   3.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.7  

>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/37 (21%), Positives = 21/37 (56%)
 Frame = -2

Query: 271 VTLGTLFENSIRSGNSFGINLSSIPDPLSNQILPIWS 161
           ++ GTLF   ++   +F ++L+ +       ++P++S
Sbjct: 128 ISYGTLFFIYVQPSATFSLDLNKVVSVFYTAVIPMFS 164


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 137 MCPGYNDS*FGLLNSPY 87
           +CPG   S F L+ SPY
Sbjct: 203 LCPGMALSQFDLMGSPY 219


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 600 YPIQRHL*YPCQRKIGI*PF 659
           Y ++RHL   CQ ++ I PF
Sbjct: 176 YLMRRHLILSCQGRLNIFPF 195


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 600 YPIQRHL*YPCQRKIGI*PF 659
           Y ++RHL   CQ ++ I PF
Sbjct: 176 YLMRRHLILSCQGRLNIFPF 195


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 600 YPIQRHL*YPCQRKIGI*PF 659
           Y ++RHL   CQ ++ I PF
Sbjct: 227 YLMRRHLILSCQGRLNIFPF 246


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 600 YPIQRHL*YPCQRKIGI*PF 659
           Y ++RHL   CQ ++ I PF
Sbjct: 176 YLMRRHLILSCQGRLNIFPF 195


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 566 VNLLCKNTGRLLPNSKTPLIPVPKKNRDLTISKER 670
           +N+   + GR+  NSK PL P    + DL    +R
Sbjct: 452 LNVQPTSKGRITLNSKDPLDPPVIWSNDLATEHDR 486


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -3

Query: 375 TISCPCSSVVTVKPKGCPGTFLRPTTFTVSIGISPLPSGLFLK 247
           T++ P  +   ++P      F RP TFT ++  +P+ +  +LK
Sbjct: 303 TVTAPLGA--EIEPSTQTIDFGRPATFTCNVRGNPIKTVSWLK 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,799
Number of Sequences: 438
Number of extensions: 4393
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)