Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0087
         (396 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   2.9  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    22   2.9  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    22   2.9  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    22   2.9  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    22   2.9  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    22   2.9  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    22   2.9  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    22   2.9  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    22   2.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   2.9  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   2.9  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   2.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   9.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   9.0  

>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 240 SNYRKYNYCGFHFFILLHDVIPSP 311
           +NY K+NY   ++ I   + IP P
Sbjct: 99  NNYNKHNYNKLYYNINYIEQIPIP 122


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 240 SNYRKYNYCGFHFFILLHDVIPSP 311
           +NY K+NY   ++ I   + IP P
Sbjct: 99  NNYNKHNYNKLYYNINYIEQIPIP 122


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 240 SNYRKYNYCGFHFFILLHDVIPSP 311
           +NY K+NY   ++ I   + IP P
Sbjct: 99  NNYNKHNYNKLYYNINYIEQIPIP 122


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 240 SNYRKYNYCGFHFFILLHDVIPSP 311
           +NY K+NY   ++ I   + IP P
Sbjct: 99  NNYNKHNYNKLYYNINYIEQIPIP 122


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 240 SNYRKYNYCGFHFFILLHDVIPSP 311
           +NY K+NY   ++ I   + IP P
Sbjct: 99  NNYNKHNYNKLYYNINYIEQIPIP 122


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 240 SNYRKYNYCGFHFFILLHDVIPSP 311
           +NY K+NY   ++ I   + IP P
Sbjct: 99  NNYNKHNYNKLYYNINYIEQIPIP 122


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 240 SNYRKYNYCGFHFFILLHDVIPSP 311
           +NY K+NY   ++ I   + IP P
Sbjct: 99  NNYNKHNYNKLYYNINYIEQIPIP 122


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 240 SNYRKYNYCGFHFFILLHDVIPSP 311
           +NY K+NY   ++ I   + IP P
Sbjct: 99  NNYNKHNYNKLYYNINYIEQIPIP 122


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 240 SNYRKYNYCGFHFFILLHDVIPSP 311
           +NY K+NY   ++ I   + IP P
Sbjct: 99  NNYNKHNYNKLYYNINYIEQIPIP 122


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -1

Query: 213 AGRYHRPAYFCREAVMRFGLKGGVAVVTILRPC 115
           +G Y  PA+    +  R+ L     V T + PC
Sbjct: 438 SGEYEIPAHGLPPSATRYDLGAVATVGTTVAPC 470


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 240 SNYRKYNYCGFHFFILLHDVIPSP 311
           +NY K+NY   ++ I   + IP P
Sbjct: 332 NNYNKHNYNKLYYNINYIEQIPIP 355


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 240 SNYRKYNYCGFHFFILLHDVIPSP 311
           +NY K+NY   ++ I   + IP P
Sbjct: 332 NNYNKHNYNKLYYNINYIEQIPIP 355


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 214 ADSQEVLPPVITAN 255
           AD + V+PPVI  N
Sbjct: 230 ADHRGVMPPVILEN 243


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 214 ADSQEVLPPVITAN 255
           AD + V+PPVI  N
Sbjct: 230 ADHRGVMPPVILEN 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,658
Number of Sequences: 438
Number of extensions: 3005
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)