Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0087
         (396 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62770.2 68416.m07051 transport protein-related weak similari...    27   3.4  
At3g62770.1 68416.m07052 transport protein-related weak similari...    27   3.4  
At3g18270.1 68416.m02324 mandelate racemase/muconate lactonizing...    27   4.5  
At5g40280.1 68418.m04886 protein farnesyltransferase beta subuni...    27   6.0  
At5g26180.2 68418.m03115 NOL1/NOP2/sun family protein similar to...    26   7.9  
At5g26180.1 68418.m03114 NOL1/NOP2/sun family protein similar to...    26   7.9  
At1g74380.1 68414.m08617 galactosyl transferase GMA12/MNN10 fami...    26   7.9  

>At3g62770.2 68416.m07051 transport protein-related weak similarity
           to Gsa12p [Pichia pastoris] GI:18307769; contains 1
           WD-40 repeat (PF00400); putative proteins - different
           species
          Length = 432

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 180 REAVMR-FGLKGGVAVVTILRPCNLYLKVGG 91
           RE   R F   GGVAVV +L  CN+   VGG
Sbjct: 107 REIFRRDFDRGGGVAVVEMLFRCNILALVGG 137


>At3g62770.1 68416.m07052 transport protein-related weak similarity
           to Gsa12p [Pichia pastoris] GI:18307769; contains 1
           WD-40 repeat (PF00400); putative proteins - different
           species
          Length = 307

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 180 REAVMR-FGLKGGVAVVTILRPCNLYLKVGG 91
           RE   R F   GGVAVV +L  CN+   VGG
Sbjct: 107 REIFRRDFDRGGGVAVVEMLFRCNILALVGG 137


>At3g18270.1 68416.m02324 mandelate racemase/muconate lactonizing
           enzyme family protein low similarity to cis,cis-muconate
           lactonizing enzyme [Burkholderia sp. TH2] GI:23491535;
           contains Pfam profile: PF01188 Mandelate
           racemase/muconate lactonizing enzyme, C-terminal domain,
           PF02746: Mandelate racemase/muconate lactonizing enzyme,
           N-terminal domain
          Length = 410

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 159 GLKGGVAVVTILRPCNLYLKVGGAFTL*MSMGSSNHLTPG 40
           G+   + V+ + R   + L +GG     ++MG S HL  G
Sbjct: 321 GILESLEVIELARSSGIELMIGGMVETRLAMGFSGHLAAG 360


>At5g40280.1 68418.m04886 protein farnesyltransferase beta subunit
           (ERA1) identical to GI:8347240 [SWISS-PROT:Q38920];
           WIGGUM mutant
          Length = 482

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 204 TYPRGLTRGPTTSNYRKYNYCGFHFFILLHDVIPSPRKSIVN 329
           TY  G+   P +  +  Y YCG    IL+++V      S++N
Sbjct: 242 TYEGGIGGEPGSEAHGGYTYCGLAAMILINEVDRLNLDSLMN 283


>At5g26180.2 68418.m03115 NOL1/NOP2/sun family protein similar to
           NOL1R [Homo sapiens] GI:16226071; contains Pfam profile
           PF01189: NOL1/NOP2/sun family
          Length = 567

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
 Frame = +2

Query: 14  YMGGRAHSP---PGVKWLLEPIDIYNVNAPPTLRYKLQGLSIVTTATPPFKPKRITASRQ 184
           + GG +H P   P  K     ++ +     P  + K  G+      TPP K +   A  +
Sbjct: 17  FSGGDSHKPKPPPATKQPFSGVESHKPKTSPATKQKFSGVESHKPKTPPGKQRFSGAESR 76

Query: 185 K 187
           K
Sbjct: 77  K 77


>At5g26180.1 68418.m03114 NOL1/NOP2/sun family protein similar to
           NOL1R [Homo sapiens] GI:16226071; contains Pfam profile
           PF01189: NOL1/NOP2/sun family
          Length = 567

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
 Frame = +2

Query: 14  YMGGRAHSP---PGVKWLLEPIDIYNVNAPPTLRYKLQGLSIVTTATPPFKPKRITASRQ 184
           + GG +H P   P  K     ++ +     P  + K  G+      TPP K +   A  +
Sbjct: 17  FSGGDSHKPKPPPATKQPFSGVESHKPKTSPATKQKFSGVESHKPKTPPGKQRFSGAESR 76

Query: 185 K 187
           K
Sbjct: 77  K 77


>At1g74380.1 68414.m08617 galactosyl transferase GMA12/MNN10 family
           protein very low similarity to
           alpha-1,2-galactosyltransferase, Schizosaccharomyces
           pombe [SP|Q09174]
          Length = 457

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 171 LLHGRNRQG-GGTYPRGLTRGPTTSNYRKYNYCGFHFFILLHDVI 302
           L +G  R G GG  PRG     T +N +    CGF   ++L   I
Sbjct: 24  LTNGGGRGGRGGLLPRGRQMQKTFNNIKITILCGFVTILVLRGTI 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,872,042
Number of Sequences: 28952
Number of extensions: 208342
Number of successful extensions: 412
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)