Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0086
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    32   0.089
SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit L11...    27   3.4  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    26   4.4  

>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 31.9 bits (69), Expect = 0.089
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 537 IHWPAFYNVVTGKTLAVTQLNCLAAHSPFARLAY 638
           I +P  Y+ V GK + +T L+C++    FARL Y
Sbjct: 139 IPFPVDYSTVQGKQVVLTVLDCVSQRVEFARLDY 172


>SPAC31A2.03 |mrpl11||mitochondrial ribosomal protein subunit
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 589 PNLIALQHIPLLPGWRIAKKARTDRLSKV 675
           PN + LQH  LLP  R AK  RT+  +KV
Sbjct: 36  PNFLILQHNNLLP--REAKSLRTELKAKV 62


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 596 KLGNRQGFPSHDVVKRRP 543
           K GNR GFPS ++ + RP
Sbjct: 314 KTGNRPGFPSLNIPRTRP 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,496
Number of Sequences: 5004
Number of extensions: 42538
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)