Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0086
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0506 + 29613307-29613601,29613641-29613678,29613679-296138...    30   2.0  
04_01_0102 + 1060539-1060657,1060752-1060904,1061478-1061728,106...    28   6.0  

>02_05_0506 +
           29613307-29613601,29613641-29613678,29613679-29613802,
           29614358-29614484,29614915-29615002,29615539-29615631,
           29616380-29616529
          Length = 304

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 560 VVKRRPVNCNTTPIGRIGTGPPLERPRTVFFFF 462
           V+  R  NCN   +GR     PL RPR+   +F
Sbjct: 130 VIDGRRANCNLASLGRAQPAVPLGRPRSAGSYF 162


>04_01_0102 +
           1060539-1060657,1060752-1060904,1061478-1061728,
           1061959-1062141,1062248-1062395,1062679-1062850,
           1062971-1063105,1063210-1063356
          Length = 435

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -1

Query: 677 ATLERRSVRAFFAIRQPGKRGMCCKAIKLGNRQGFP 570
           A LE    RAF  +   G  G C  +I LG R G P
Sbjct: 364 APLENFRARAFSLLSIAGLSGFCQVSIPLGMRNGLP 399


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,895,236
Number of Sequences: 37544
Number of extensions: 260888
Number of successful extensions: 472
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)