Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0086
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.8  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   6.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.3  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 6/25 (24%), Positives = 16/25 (64%)
 Frame = +1

Query: 157 YYVIFLIYNVNRHLSIYLLIIIGLC 231
           Y ++ + +++ RH+  +L+ + G C
Sbjct: 200 YSMLLVYFHLQRHMGNFLIQVYGPC 224


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 489 LEGGPGTNSPY 521
           L+G PG NSPY
Sbjct: 26  LQGFPGKNSPY 36


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 214 IIIGLCNKTFRNKIKKKNY 270
           II  L NKT  N    KNY
Sbjct: 314 IISSLSNKTIHNNNNYKNY 332


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -1

Query: 548 RPVNCNTTP 522
           RP++C+TTP
Sbjct: 656 RPISCHTTP 664


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,825
Number of Sequences: 438
Number of extensions: 3364
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)