Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0084
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    30   0.17 
SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho...    29   0.53 
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    26   3.7  
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    25   4.9  
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    25   6.5  
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    25   8.6  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   8.6  

>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 372 WTPPKGHVDPGETDWMTALRETKEEAGL-CEDHLD 271
           W  PKG +D  E+D   A+RE  EE G  C   ++
Sbjct: 123 WGFPKGKIDKDESDVDCAIREVYEETGFDCSSRIN 157


>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
           5',5'''-p1,p6-hexaphosphate hydrolase Aps1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 405 LLLQTSYGEH-HWTPPKGHVDPGETDWMTALRETKEEAGL 289
           +LL +S  +H  W  PKG  +  E+    ALRE  EE GL
Sbjct: 57  VLLVSSAKKHPSWVVPKGGWEADESVQQAALREGWEEGGL 96


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 108 DISCASCNESHFISWCS 158
           D SCA CN +  + WC+
Sbjct: 683 DQSCADCNTTARVEWCA 699


>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 60  HFS*NSASNCLMSSYFDISCASCNE 134
           H+S NS    L  +  DISC +CN+
Sbjct: 233 HYSTNSEMLDLSKTSSDISCPNCND 257


>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 190 KNPEQTVTLSSEHQDMKWL-SLQEAQEISKYEDMRQLLAEF 71
           K P  T  + +    +K L S+ + QE+ + E++R+L AEF
Sbjct: 180 KPPVHTPAVPAVPSQVKDLPSISKPQELDEEEELRKLQAEF 220


>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 157 EHQDMKWLSLQEAQEISKYE 98
           +HQ    L L+EA+ I+KYE
Sbjct: 491 QHQGFGTLLLEEAERIAKYE 510


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 166  LSSEHQDMKWLSLQEAQEISKYEDMRQLLAEFYE 65
            LS        ++   +  I KY+ +  +L EFYE
Sbjct: 1020 LSRTQATSNMIAFDASGRIKKYDSVEDILTEFYE 1053


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,925,585
Number of Sequences: 5004
Number of extensions: 37960
Number of successful extensions: 103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)