Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0084
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0848 - 25334701-25334949,25335076-25335184,25335667-253357... 33 0.13
04_04_1653 + 35070026-35070064,35070358-35070408,35070490-350705... 30 1.2
09_06_0215 - 21621889-21621949,21622275-21622333,21622442-216225... 29 2.1
06_02_0041 + 10889741-10890092,10890161-10890235,10891139-108923... 29 2.1
05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610 29 2.1
04_04_0308 + 24286923-24286927,24288430-24288907,24288980-242890... 27 6.5
03_05_0559 - 25610474-25610951,25611149-25611890,25612355-256127... 27 6.5
08_02_0481 + 17636359-17636593,17638136-17638278,17638431-176385... 27 8.7
08_02_0479 + 17627605-17627839,17628965-17629107,17630018-176301... 27 8.7
04_04_0703 + 27398358-27398466,27398549-27398859,27399044-273991... 27 8.7
04_04_0049 - 22356139-22357649,22357764-22357995 27 8.7
>06_03_0848 -
25334701-25334949,25335076-25335184,25335667-25335701,
25335793-25335843,25335941-25336018,25336214-25336351,
25336664-25336729,25337387-25337572
Length = 303
Score = 33.1 bits (72), Expect = 0.13
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 372 WTPPKGHVDPGETDWMTALRETKEEAGLCEDHLDI 268
W P G V+PGE + A+RE KEE G+ + +++
Sbjct: 147 WKFPTGVVEPGEDINLGAVREVKEETGIDTEFVEV 181
>04_04_1653 +
35070026-35070064,35070358-35070408,35070490-35070582,
35070758-35070855,35072437-35072551,35072628-35072720
Length = 162
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 372 WTPPKGHVDPGETDWMTALRETKEEAGL 289
W P+G +D GE A RE +EE G+
Sbjct: 26 WQMPQGGIDAGEDPREAAFRELREETGV 53
>09_06_0215 -
21621889-21621949,21622275-21622333,21622442-21622582,
21622669-21622804,21623266-21623342,21623594-21623725,
21624915-21624938,21626147-21626365,21626401-21626718
Length = 388
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -2
Query: 399 LQTSYGEHHWTPPKGHVDPGETDWMTALRETKEEAGLCED 280
++ +YG WT P G+++ GE+ A RET EEA C D
Sbjct: 250 IEPAYGL--WTLPAGYLEVGESAAEGASRETLEEA--CAD 285
>06_02_0041 +
10889741-10890092,10890161-10890235,10891139-10892341,
10892970-10893253,10893343-10893459,10894126-10894388,
10894557-10894725,10894838-10895110,10895674-10895718,
10896472-10896591,10896926-10896987,10897296-10897318,
10897911-10898128
Length = 1067
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 220 KTVV-YWLAKLKNPEQTVTLSSEHQDMKWLSLQEAQEISKYEDMRQLLAEFYEKCK 56
KT++ W A+ PEQ V L E +MK L E+ ED + ++E + K
Sbjct: 765 KTIMALWKARSLTPEQKVQLVEEESEMKDLQNNESDSFLGIEDAK--MSEVFSSTK 818
>05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610
Length = 164
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 363 PKGHVDPGETD-WMTALRETKEEAGL 289
P G V+ G+ D TALRE KEE GL
Sbjct: 102 PGGKVEEGDADATATALREAKEEIGL 127
>04_04_0308 +
24286923-24286927,24288430-24288907,24288980-24289099,
24289182-24289235,24289467-24289579,24289799-24290011,
24290123-24290201,24290323-24290376,24290448-24290522,
24291029-24291193,24291843-24291941,24292186-24292241,
24292331-24292433,24293289-24293417,24293657-24293835,
24293953-24293977,24294060-24294175,24294252-24294342
Length = 717
Score = 27.5 bits (58), Expect = 6.5
Identities = 21/68 (30%), Positives = 30/68 (44%)
Frame = -1
Query: 259 HNKTLNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMKWLSLQEAQEISKYEDMRQLL 80
H + E++ E K Y L P+ LS+ KWLS E+ +ISK + M L
Sbjct: 535 HKLKFSGEISFELKDPAYCYVILWRPDDFNALSANLT--KWLSEVESSKISKLDAMFALA 592
Query: 79 AEFYEKCK 56
+ CK
Sbjct: 593 NFAVKGCK 600
>03_05_0559 -
25610474-25610951,25611149-25611890,25612355-25612744,
25613041-25613099,25613186-25613326,25613449-25613545,
25614999-25615185
Length = 697
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 117 CASCN-ESHFISWCSDERVTVCSGFLSF 197
C SC HFI C ER T SG++ +
Sbjct: 177 CRSCGVPGHFIQHCQQERKTPPSGYVCY 204
>08_02_0481 +
17636359-17636593,17638136-17638278,17638431-17638550,
17638916-17639116
Length = 232
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 363 PKGHVDPGETD-WMTALRETKEEAGL 289
P G + G+ D TALRE KEE GL
Sbjct: 84 PGGKAEEGDADDAATALREAKEEIGL 109
>08_02_0479 +
17627605-17627839,17628965-17629107,17630018-17630137,
17630497-17630721
Length = 240
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 363 PKGHVDPGETD-WMTALRETKEEAGL 289
P G + G+ D TALRE KEE GL
Sbjct: 84 PGGKAEEGDADDAATALREAKEEIGL 109
>04_04_0703 +
27398358-27398466,27398549-27398859,27399044-27399109,
27399196-27399258,27399304-27399444,27399535-27399612,
27399688-27399738,27399829-27399863,27399982-27400090,
27400235-27400441
Length = 389
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 372 WTPPKGHVDPGETDWMTALRETKEEAGLCEDHLDI 268
W P G + E + A RE KEE G+ + +D+
Sbjct: 247 WKLPTGFILASEEIFTGATREVKEETGVDTEFVDV 281
>04_04_0049 - 22356139-22357649,22357764-22357995
Length = 580
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 417 IIQFLLLQTSYGEHHWTPPKGHVDPGETDWMTA 319
++ LL+ +G WTP GH +T W++A
Sbjct: 38 VMVVLLMAVLFGAR-WTPSGGHGGGADTSWVSA 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,705,757
Number of Sequences: 37544
Number of extensions: 218955
Number of successful extensions: 557
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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