Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0084
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.008
SB_18314| Best HMM Match : NUDIX (HMM E-Value=2e-05)                   37   0.008
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       31   0.55 
SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)        30   0.95 
SB_53072| Best HMM Match : K_tetra (HMM E-Value=8.2e-31)               28   3.8  
SB_26153| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_34339| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   8.9  
SB_6270| Best HMM Match : Vicilin_N (HMM E-Value=0.11)                 27   8.9  
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)             27   8.9  
SB_38623| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)                  27   8.9  

>SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = -2

Query: 456 RAAGLVIFRNYNQIIQFLLLQTSYGEHHWTPPKGHVDPGETDWMTALRETKEE 298
           + AG V FR   +  + LL+ +S     W  P G ++PGE    TA+RE +EE
Sbjct: 101 KRAGCVCFRTELEK-EVLLVSSSKHPDKWVVPAGGIEPGEEPKETAIREVQEE 152


>SB_18314| Best HMM Match : NUDIX (HMM E-Value=2e-05)
          Length = 169

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = -2

Query: 456 RAAGLVIFRNYNQIIQFLLLQTSYGEHHWTPPKGHVDPGETDWMTALRETKEE 298
           + AG V FR   +  + LL+ +S     W  P G ++PGE    TA+RE +EE
Sbjct: 66  KRAGCVCFRTELEK-EVLLVSSSKHPDKWVVPAGGIEPGEEPKETAIREVQEE 117


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 247  LNYEVNGEPKTVVYWL--AKLKNPEQTVTLSSEHQ 149
            L  EV+G+PK VV WL   +L  P   +TL +E Q
Sbjct: 2983 LEVEVSGKPKPVVEWLKDGELVKPSSLMTLETEGQ 3017


>SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)
          Length = 1211

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 190 KNPEQTVTLSSEHQDMKWLSLQEAQEISKYEDMRQLLAEFYEKCK 56
           KN E    +  + QD+K +  ++++ + KYED  +   + YE+ K
Sbjct: 77  KNSELEGKVEKQRQDIKRIKREKSEMVDKYEDELEEALDCYEESK 121


>SB_53072| Best HMM Match : K_tetra (HMM E-Value=8.2e-31)
          Length = 414

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 235 LHNLKFCYVFVNI*VIFAQTGFFFCFSQSCHPIS-FSRINMSFWWC 369
           L  L+   +FV + V+ + +  ++  +   HP S FS I  +FWWC
Sbjct: 287 LKELEMAMLFVCMIVVLSSSAVYY--TDLGHPKSQFSSIPDAFWWC 330


>SB_26153| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 250 FCYVFVNI*VIFAQTGFFFCFSQSCHPISFSRINMSF 360
           FCY+ V I   F  TGF       C+PI +  +N  F
Sbjct: 207 FCYLRVYITEAFIFTGFMASSHSVCNPIIYLTMNKRF 243


>SB_34339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 615

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 443 WLFSEIIIKLSNSYYCKHPTENIIGHHQKDMLILEKLI 330
           WL + I++  S SY C H +      HQ+   +  +L+
Sbjct: 222 WLTAVILLNSSTSYLCDHQSRCPPNCHQRQKRVCSRLV 259


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 330  WMTALRETKEEAGLCEDHLDIYK 262
            W+  L   ++E  LC DHLD  K
Sbjct: 4749 WIAVLNSVQQEYELCSDHLDKVK 4771


>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4248

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 410  NSYYCKHPTENIIGHHQKD 354
            N+ YCKHP   ++G++ +D
Sbjct: 3668 NNKYCKHPLLVVVGYNSRD 3686


>SB_6270| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
          Length = 535

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 351 VDPGETDWMTALRETKEEAGL 289
           +DP E DW  +LR T+ E+ +
Sbjct: 61  IDPTERDWKESLRRTRSESDI 81


>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
          Length = 1496

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -2

Query: 456  RAAGLVIFRNYNQIIQFLLLQTSYGEHHWTPPKGHVDPGETDWMTALRETKEEA 295
            R +  V+ +   ++++F+ +Q     + W  P G V+PG+        E  EEA
Sbjct: 1145 RTSAGVMLQGGKKVLEFVAIQRK-DNNQWAIPGGMVEPGQLVTQALKAEFGEEA 1197


>SB_38623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 351 VDPGETDWMTALRETKEEAGL 289
           +DP E DW  +LR T+ E+ +
Sbjct: 55  IDPTERDWKESLRRTRSESDI 75


>SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)
          Length = 1405

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 224 TQNCCVLVGKA*KS*TDSHPFI*TPRY--EVALIARSTGNIKIRRHETI 84
           ++N CV +G   ++ T+   FI TP Y  E   + +  G +K   H T+
Sbjct: 211 SRNACVKLGLVVRADTNVEEFIPTPDYRTEFPKLFKGLGKMKTEYHTTL 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,047,357
Number of Sequences: 59808
Number of extensions: 273841
Number of successful extensions: 905
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)