Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0084
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032625-2|CAB63351.1|  138|Caenorhabditis elegans Hypothetical ...    97   9e-21
U55855-1|AAA98017.1|  188|Caenorhabditis elegans Nudix family pr...    38   0.006
Z82053-2|CAB04835.1|  365|Caenorhabditis elegans Hypothetical pr...    36   0.022
AF067946-2|AAC17685.1|  223|Caenorhabditis elegans Nudix family ...    30   0.84 
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       30   1.1  
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated...    30   1.1  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    30   1.1  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    30   1.1  
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated...    30   1.1  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    30   1.1  
Z82269-7|CAB05204.2|  786|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z82269-6|CAB05206.3|  809|Caenorhabditis elegans Hypothetical pr...    28   4.5  
DQ143943-1|AAZ73241.1|  770|Caenorhabditis elegans RNA-decapping...    28   4.5  
AL021488-8|CAJ43919.1|  786|Caenorhabditis elegans Hypothetical ...    28   4.5  
AL021488-7|CAJ43918.1|  809|Caenorhabditis elegans Hypothetical ...    28   4.5  
Z77666-13|CAB01229.2|  315|Caenorhabditis elegans Hypothetical p...    27   7.8  

>AL032625-2|CAB63351.1|  138|Caenorhabditis elegans Hypothetical
           protein Y37H9A.6 protein.
          Length = 138

 Score = 96.7 bits (230), Expect = 9e-21
 Identities = 41/66 (62%), Positives = 51/66 (77%)
 Frame = -2

Query: 456 RAAGLVIFRNYNQIIQFLLLQTSYGEHHWTPPKGHVDPGETDWMTALRETKEEAGLCEDH 277
           +AAGLVI+R     I+FLLLQ SY  HHWTPPKGHVDPGE +W  A+RETKEEA + ++ 
Sbjct: 4   KAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQ 63

Query: 276 LDIYKD 259
           L I++D
Sbjct: 64  LTIHED 69



 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 32/62 (51%), Positives = 44/62 (70%)
 Frame = -1

Query: 256 NKTLNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMKWLSLQEAQEISKYEDMRQLLA 77
           ++TL YE  G+PK+V YWLAKL NP+  V LS EHQ+ KW  L++A +I+ Y +M  LL 
Sbjct: 71  HETLFYEAKGKPKSVKYWLAKLNNPDD-VQLSHEHQNWKWCELEDAIKIADYAEMGSLLR 129

Query: 76  EF 71
           +F
Sbjct: 130 KF 131


>U55855-1|AAA98017.1|  188|Caenorhabditis elegans Nudix family
           protein 3 protein.
          Length = 188

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 17/33 (51%), Positives = 23/33 (69%)
 Frame = -2

Query: 363 PKGHVDPGETDWMTALRETKEEAGLCEDHLDIY 265
           P G +DPGET   TALRET EE G+  + ++I+
Sbjct: 35  PGGRMDPGETTTETALRETFEEIGVNAESVEIW 67


>Z82053-2|CAB04835.1|  365|Caenorhabditis elegans Hypothetical
           protein T26E3.2 protein.
          Length = 365

 Score = 35.5 bits (78), Expect = 0.022
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -2

Query: 450 AGLVIFRNYNQIIQFLLLQTSYGEHH--WTPPKGHVDPGETDWMTALRETKEEAGLCEDH 277
           A  +I RN     + LL+Q +       W  P G V+ GET     +RE KEE G   D 
Sbjct: 76  AAAIILRNQGDDTEVLLIQEAKKSCRGKWYMPAGRVEAGETIEEAVVREVKEETGYSCDV 135

Query: 276 LDI 268
           +++
Sbjct: 136 VEL 138


>AF067946-2|AAC17685.1|  223|Caenorhabditis elegans Nudix family
           protein 2 protein.
          Length = 223

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 363 PKGHVDPGETDWMTALRETKEEAG 292
           P G +D GET    A+RE KEE G
Sbjct: 109 PAGLIDAGETAQQAAIRELKEETG 132


>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 265  QRHNKTLNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMKWLSL 128
            ++    L  +V GEP+  + W  + K  E +  + +EH+D   L+L
Sbjct: 3830 EKQQAILKCKVKGEPRPKIKWTKEGKEVEMSARVRAEHKDDGTLTL 3875


>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
            protein 89, isoform e protein.
          Length = 5992

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 265  QRHNKTLNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMKWLSL 128
            ++    L  +V GEP+  + W  + K  E +  + +EH+D   L+L
Sbjct: 3190 EKQQAILKCKVKGEPRPKIKWTKEGKEVEMSARVRAEHKDDGTLTL 3235


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
            protein 89, isoform a protein.
          Length = 6632

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 265  QRHNKTLNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMKWLSL 128
            ++    L  +V GEP+  + W  + K  E +  + +EH+D   L+L
Sbjct: 3830 EKQQAILKCKVKGEPRPKIKWTKEGKEVEMSARVRAEHKDDGTLTL 3875


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
            protein 89, isoform g protein.
          Length = 7122

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 265  QRHNKTLNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMKWLSL 128
            ++    L  +V GEP+  + W  + K  E +  + +EH+D   L+L
Sbjct: 3830 EKQQAILKCKVKGEPRPKIKWTKEGKEVEMSARVRAEHKDDGTLTL 3875


>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
            protein 89, isoform f protein.
          Length = 7441

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 265  QRHNKTLNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMKWLSL 128
            ++    L  +V GEP+  + W  + K  E +  + +EH+D   L+L
Sbjct: 3190 EKQQAILKCKVKGEPRPKIKWTKEGKEVEMSARVRAEHKDDGTLTL 3235


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 265  QRHNKTLNYEVNGEPKTVVYWLAKLKNPEQTVTLSSEHQDMKWLSL 128
            ++    L  +V GEP+  + W  + K  E +  + +EH+D   L+L
Sbjct: 3830 EKQQAILKCKVKGEPRPKIKWTKEGKEVEMSARVRAEHKDDGTLTL 3875


>Z82269-7|CAB05204.2|  786|Caenorhabditis elegans Hypothetical
           protein F52G2.1b protein.
          Length = 786

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 405 LLLQTSYGE-HHWTPPKGHVDPGETDWMTALRETKEEAG 292
           +L+Q+ + +  +W  PKG ++  E     A+RET EE G
Sbjct: 256 VLVQSYFAKGKNWGFPKGKINQAEPPRDAAIRETFEETG 294


>Z82269-6|CAB05206.3|  809|Caenorhabditis elegans Hypothetical
           protein F52G2.1a protein.
          Length = 809

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 405 LLLQTSYGE-HHWTPPKGHVDPGETDWMTALRETKEEAG 292
           +L+Q+ + +  +W  PKG ++  E     A+RET EE G
Sbjct: 279 VLVQSYFAKGKNWGFPKGKINQAEPPRDAAIRETFEETG 317


>DQ143943-1|AAZ73241.1|  770|Caenorhabditis elegans RNA-decapping
           protein protein.
          Length = 770

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 405 LLLQTSYGE-HHWTPPKGHVDPGETDWMTALRETKEEAG 292
           +L+Q+ + +  +W  PKG ++  E     A+RET EE G
Sbjct: 240 VLVQSYFAKGKNWGFPKGKINQAEPPRDAAIRETFEETG 278


>AL021488-8|CAJ43919.1|  786|Caenorhabditis elegans Hypothetical
           protein F52G2.1b protein.
          Length = 786

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 405 LLLQTSYGE-HHWTPPKGHVDPGETDWMTALRETKEEAG 292
           +L+Q+ + +  +W  PKG ++  E     A+RET EE G
Sbjct: 256 VLVQSYFAKGKNWGFPKGKINQAEPPRDAAIRETFEETG 294


>AL021488-7|CAJ43918.1|  809|Caenorhabditis elegans Hypothetical
           protein F52G2.1a protein.
          Length = 809

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 405 LLLQTSYGE-HHWTPPKGHVDPGETDWMTALRETKEEAG 292
           +L+Q+ + +  +W  PKG ++  E     A+RET EE G
Sbjct: 279 VLVQSYFAKGKNWGFPKGKINQAEPPRDAAIRETFEETG 317


>Z77666-13|CAB01229.2|  315|Caenorhabditis elegans Hypothetical
           protein K08E7.6 protein.
          Length = 315

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 24/81 (29%), Positives = 29/81 (35%), Gaps = 1/81 (1%)
 Frame = -2

Query: 387 YGEHHWTPPKGHVDPGETDWMTALRE-TKEEAGLCEDHLDIYKDITKL*IMK*TENPKLL 211
           Y E  W  PK        DWM+ L E    E     D  D   D     IM+ T  PK  
Sbjct: 135 YAEFSWAEPKRRSRGPVPDWMSGLAEIMMSEQDTKADDADSASD-----IMEATYGPKAK 189

Query: 210 CTGWQSLKILNRQSPFHLNTK 148
               Q  ++   Q   HL+ K
Sbjct: 190 RLKLQRTEMQLHQLQLHLDMK 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,761,279
Number of Sequences: 27780
Number of extensions: 217906
Number of successful extensions: 629
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)