Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0083
         (636 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M23391-1|AAA28487.1|  868|Drosophila melanogaster DNA-binding pr...    29   4.0  
AY058690-1|AAL13919.1|  869|Drosophila melanogaster LD40824p pro...    29   4.0  
AE014297-4265|AAF56815.1|  869|Drosophila melanogaster CG1454-PA...    29   4.0  
BT010305-1|AAQ23623.1| 1124|Drosophila melanogaster GM01353p pro...    28   9.2  
AE014298-3060|AAF50875.1|  223|Drosophila melanogaster CG11229-P...    28   9.2  

>M23391-1|AAA28487.1|  868|Drosophila melanogaster DNA-binding
           protein protein.
          Length = 868

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 43  QEQKH-SRYETRPSTIQTCRCSRCAVKLRQNSCLKVGDVIYVDAYRF 180
           QE+ H  R++   +  ++ RC +C    +   CLKV ++++++   F
Sbjct: 395 QERSHLQRHQKYHAQTRSYRCEKCGKMYKTERCLKVHNLVHLEQRPF 441


>AY058690-1|AAL13919.1|  869|Drosophila melanogaster LD40824p
           protein.
          Length = 869

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 43  QEQKH-SRYETRPSTIQTCRCSRCAVKLRQNSCLKVGDVIYVDAYRF 180
           QE+ H  R++   +  ++ RC +C    +   CLKV ++++++   F
Sbjct: 396 QERSHLQRHQKYHAQTRSYRCEKCGKMYKTERCLKVHNLVHLEQRPF 442


>AE014297-4265|AAF56815.1|  869|Drosophila melanogaster CG1454-PA
           protein.
          Length = 869

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 43  QEQKH-SRYETRPSTIQTCRCSRCAVKLRQNSCLKVGDVIYVDAYRF 180
           QE+ H  R++   +  ++ RC +C    +   CLKV ++++++   F
Sbjct: 396 QERSHLQRHQKYHAQTRSYRCEKCGKMYKTERCLKVHNLVHLEQRPF 442


>BT010305-1|AAQ23623.1| 1124|Drosophila melanogaster GM01353p
           protein.
          Length = 1124

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +2

Query: 461 PGVTQLNRLAAHSPFAAGVIAKRPAPDRPFQQLAQPGLGNGQIVSVKYF 607
           P V  L  LA  +P  A  +A  P PD   +Q   P L  G   S +YF
Sbjct: 3   PVVPGLVALATTTPAVAEAVAPPPHPDVQRRQHQPPDLLQGASSSAEYF 51


>AE014298-3060|AAF50875.1|  223|Drosophila melanogaster CG11229-PA
           protein.
          Length = 223

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 425 VNCNTTHYRANWVPGPPSSV 366
           VN + T  R+ W PGPP+S+
Sbjct: 192 VNASATASRSFWFPGPPASI 211


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,815,025
Number of Sequences: 53049
Number of extensions: 710281
Number of successful extensions: 1494
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1494
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2662347150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)