Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0083
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   5.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.6  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 441 NVVTGKTLALPNLIALQHIPLSPLA**RKGPHPIALSNS 557
           N ++G+T   P+ I +  +  S L    K PH IA++++
Sbjct: 141 NGISGETSVCPSQIVVFDLKNSKLLKQVKIPHDIAINST 179


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 452 SHDVVKRRPVNCNTTHYRANWVPGP 378
           S +  K++P +C+T  YR   V  P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -3

Query: 373 RVFVMRWLSRIWAGACASLSFR*LILHEL 287
           R+  + WL  IW   C   + + +  HE+
Sbjct: 77  RILDVDWLHNIWRPDCFFKNAKKVTFHEM 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,514
Number of Sequences: 438
Number of extensions: 4613
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)