Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0082
         (658 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    32   0.004
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    23   1.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.9  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   5.1  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   5.1  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   5.1  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.9  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 32.3 bits (70), Expect = 0.004
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 431 KRELSEPVQAFSRGGPVPNSPYSESYTIHWPSFYNVV 541
           ++E++E   A+  G P+P   Y+E+ T  W S +N V
Sbjct: 233 RKEIAEIAFAYKYGDPIPYIQYTETETKTWGSVFNTV 269


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 367 PSSGLDDYRTIREVYPFEQKIEKRIIRTSS 456
           PS+G DDY     +  F  +++ R IRT++
Sbjct: 541 PSAG-DDYDIYTRLVSFSDRLKSRGIRTAA 569


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 413  LSNKK*KRELSEPVQAFSRGGPVPNSPYSESYT 511
            +SN K   + S  VQAF++ G  P S   ++YT
Sbjct: 1063 ISNLKTYTQYSVVVQAFNKVGAGPLSDDIKAYT 1095


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 79  GSLSYPNKYVIHYKYLILNKFT 144
           GS+ +PN+Y ++ +Y    K T
Sbjct: 280 GSMHFPNQYQMNQEYRTDRKHT 301


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 79  GSLSYPNKYVIHYKYLILNKFT 144
           GS+ +PN+Y ++ +Y    K T
Sbjct: 228 GSMHFPNQYQMNQEYRTDRKHT 249


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 79  GSLSYPNKYVIHYKYLILNKFT 144
           GS+ +PN+Y ++ +Y    K T
Sbjct: 411 GSMHFPNQYQMNQEYRTDRKHT 432


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 489 RPIVSRIQFTGRRFTTS 539
           RP V    F G+RFT S
Sbjct: 343 RPFVCNWLFCGKRFTRS 359


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,203
Number of Sequences: 336
Number of extensions: 3461
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)