Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0082
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           32   0.46 
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    29   3.3  
03_02_0878 + 12088119-12088233,12088511-12088608,12088689-120887...    29   4.3  
11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371     28   5.7  
01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448           28   5.7  
03_01_0571 - 4214186-4214725                                           27   9.9  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 500 ESYTIHWPSFYNVV-TGKTLALPNLIALQH 586
           ES +  W  F N+V +G TL++PN + LQH
Sbjct: 67  ESISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 497 SESYTIHWPSFYNVV-TGKTLALPNLIALQH 586
           +ES    W  F N+V +G TL+LP  + LQH
Sbjct: 126 NESIGAAWSRFTNLVQSGPTLSLPEYVLLQH 156


>03_02_0878 +
           12088119-12088233,12088511-12088608,12088689-12088795,
           12088900-12088974,12089053-12089124,12089221-12089382,
           12089476-12089550,12089635-12089706,12089813-12089884,
           12090150-12090224,12090329-12090400,12090491-12090625,
           12090712-12091187,12091270-12091779,12091876-12092111,
           12092200-12092712
          Length = 954

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
 Frame = +1

Query: 367 PSSGLDDYRTIREVYPFEQKIEKRIIRTSSSILEGGPGTQFAL**VVYNSLAVVLQRRDW 546
           P      Y  I   YPF +  E+   R+  +I+    G    +  +V  ++  ++QRR  
Sbjct: 518 PPKEFGPYYFIASPYPFPE--ERSSSRSKGAIIGIAAGCGVLVVALVGAAVYALVQRRR- 574

Query: 547 ENPGVTQLNRLAAHSPFASW-RNSERGPAP 633
                 Q  R     PFASW R+ ERG AP
Sbjct: 575 -----AQKAREELGGPFASWKRSEERGGAP 599


>11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371
          Length = 680

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 500 ESYTIHWPSFYNVV-TGKTLALPNLIALQH 586
           ES    W  F N+V +G TL+LP  + LQH
Sbjct: 408 ESIGAAWSRFTNLVQSGLTLSLPEYVLLQH 437


>01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448
          Length = 850

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +2

Query: 449 PVQAFSR-GGPVPNSPYSESYTIHWPSFYNVVTGKTLALPNLIALQHIPLLPAGVIAK 619
           P+ +FS   GP+P +P   S+ +H  +  ++   + LALP   A  H  + P+  IAK
Sbjct: 69  PILSFSLLPGPLPAAPAPLSFHLHGETLASLAPLRRLALP---ACAHRRVPPSSSIAK 123


>03_01_0571 - 4214186-4214725
          Length = 179

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +1

Query: 22  AVAAALELVDPPGCRNSGGG---SLSYPNKYVI 111
           A AAA  +V  PGC   GGG   ++ Y  K V+
Sbjct: 47  AAAAAAPVVQEPGCEVDGGGQQFTIFYAGKVVV 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,338,766
Number of Sequences: 37544
Number of extensions: 403409
Number of successful extensions: 990
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)