Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0082
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.64 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.8  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   7.8  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    21   7.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   7.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 289 EQ*KETPKALQDRL*KL*IFVDFSRIPSSGLDDYRTI 399
           E+ KE  KAL   L  L   V FS +  SG D  RT+
Sbjct: 705 EEEKEVEKALLKPLLSLEDLVRFSTLEGSGGDSLRTL 741


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 79  RRPNSCSPGDPLVLERPPPRGE 14
           R P    PGD  + +RP PR +
Sbjct: 914 RSPGRAWPGDSDIRQRPIPRSD 935


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 627 GPSFAITPAGKR 592
           GPS  ITPA KR
Sbjct: 192 GPSIRITPAKKR 203


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 97  LDRIGIRRPNSCSPGDPLVLERPPPRGE 14
           +DR  +      S G+PL L RP  R E
Sbjct: 459 MDRDAVYLQPGMSFGEPLGLRRPQEREE 486


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 15/68 (22%), Positives = 28/68 (41%)
 Frame = +2

Query: 404 KSTLSNKK*KRELSEPVQAFSRGGPVPNSPYSESYTIHWPSFYNVVTGKTLALPNLIALQ 583
           K    N+  + +  EP    S       + Y+ +Y    P +YN++  + + +P  I   
Sbjct: 297 KERSRNRTEREKSKEPKIISSLSNNYNYNNYNNNYK---PLYYNIINIEQIPVPVPIYCG 353

Query: 584 HIPLLPAG 607
           + P  P G
Sbjct: 354 NFPPRPMG 361


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 539 VTGKTLALPNLIALQHIPLLPAGVIAKEG 625
           +   ++  P LI    IP++ AG+IA  G
Sbjct: 40  IAAMSVMRPELIMKSIIPVVMAGIIAIYG 68


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 636 DRCGPSFAITPAGK 595
           D+C P F +T +GK
Sbjct: 808 DQCCPGFTMTKSGK 821


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,739
Number of Sequences: 438
Number of extensions: 4202
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)