Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0082
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27020.1 68414.m03294 expressed protein                             29   2.1  
At5g04140.2 68418.m00402 glutamate synthase (GLU1) / ferredoxin-...    28   4.8  
At5g04140.1 68418.m00401 glutamate synthase (GLU1) / ferredoxin-...    28   4.8  
At1g21540.1 68414.m02694 AMP-binding protein, putative strong si...    27   8.3  

>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 544 WENPGVTQLNRLAAHSPFASW 606
           WE P  T  N+LA  S FA+W
Sbjct: 163 WEKPTSTDFNQLAKESEFAAW 183


>At5g04140.2 68418.m00402 glutamate synthase (GLU1) /
            ferredoxin-dependent glutamate synthase (Fd-GOGAT 1)
            identical to ferredoxin-dependent glutamate synthase
            precursor [Arabidopsis thaliana] GI:3869251
          Length = 1648

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = +2

Query: 353  ISPGSHHQVLMITEQFGKSTLSNKK*KRELSEPVQ-AFSRGGPVPNSPYSESYTIHWPSF 529
            I  G     + I ++F    +S     RE  E +  A +R G   NS       I W   
Sbjct: 982  IPVGKVEPAVAIVQRFCTGGMSLGAISRETHEAIAIAMNRIGGKSNSGEGGEDPIRWKPL 1041

Query: 530  YNVVTGKTLALPNLIALQH 586
             +VV G +  LP+L  LQ+
Sbjct: 1042 TDVVDGYSPTLPHLKGLQN 1060


>At5g04140.1 68418.m00401 glutamate synthase (GLU1) /
            ferredoxin-dependent glutamate synthase (Fd-GOGAT 1)
            identical to ferredoxin-dependent glutamate synthase
            precursor [Arabidopsis thaliana] GI:3869251
          Length = 1622

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = +2

Query: 353  ISPGSHHQVLMITEQFGKSTLSNKK*KRELSEPVQ-AFSRGGPVPNSPYSESYTIHWPSF 529
            I  G     + I ++F    +S     RE  E +  A +R G   NS       I W   
Sbjct: 956  IPVGKVEPAVAIVQRFCTGGMSLGAISRETHEAIAIAMNRIGGKSNSGEGGEDPIRWKPL 1015

Query: 530  YNVVTGKTLALPNLIALQH 586
             +VV G +  LP+L  LQ+
Sbjct: 1016 TDVVDGYSPTLPHLKGLQN 1034


>At1g21540.1 68414.m02694 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501; identical to cDNA adenosine monophosphate
           binding protein 9 AMPBP9 (AMPBP9) GI:20799726
          Length = 550

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +2

Query: 368 HHQVLMITEQFGKSTLSNKK*KRELSEPVQAFSRGGPVPNSPYSESYTI 514
           HH   M       + L+N   ++ L  PVQ  + G P P +  S + T+
Sbjct: 274 HHVTHMCAAPMVLNMLTNYPSRKPLKNPVQVMTAGAPPPAAIISRAETL 322


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,826,415
Number of Sequences: 28952
Number of extensions: 305707
Number of successful extensions: 658
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)