Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0081
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          26   0.29 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.8  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   6.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.3  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   8.3  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 17/45 (37%), Positives = 18/45 (40%)
 Frame = -3

Query: 221 CSVPHLLHKSPSVPYRPSRPDGGAFPRSRGTRRKEHHLLRNRPCT 87
           C VP      PSV    S P     PR   T+ K HH    RP T
Sbjct: 121 CEVPESRDGPPSVSLS-SPPREPGTPRINFTKLKRHHPRYKRPRT 164


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 319  LRVAPEEHPVLLTEASLNPKANREKMTHI 405
            LR+ P  H V+ T   +NP  + EK+ HI
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL-HI 1488


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 416 VWNMIWVIFSLLALG 372
           +W+ +W++F  LA G
Sbjct: 1   MWHFLWIVFLALANG 15


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 366 PQPQGQQREDDPYHV 410
           P+PQ + +   PYHV
Sbjct: 251 PKPQTKTKPTSPYHV 265


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 83  GMCKAGFAGD 112
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 142 DRGEHGARSIISCETGLA 89
           D GEH   ++   E GLA
Sbjct: 130 DPGEHNGDTVTDVEAGLA 147


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 142 DRGEHGARSIISCETGLA 89
           D GEH   ++   E GLA
Sbjct: 125 DPGEHNGDTVTDVEAGLA 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,195
Number of Sequences: 438
Number of extensions: 4355
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)