Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0080
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.78 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.6  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
 Frame = +2

Query: 449 PPPSQRDFAARAASEKSSTRLRRTFGLPKGLHLGRLSTRNI--GRTQATPVIEHQKTD 616
           P    R   A  + + S  R    FG+P G   GR     I   R+  TP  E   T+
Sbjct: 522 PADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTE 579


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +2

Query: 323 CRALILEECNFGMLQPIFLPPSAVSIP 403
           C +++L    F +L    +PP++++IP
Sbjct: 284 CSSILLSLTVFFLLLAEIIPPTSLAIP 310


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = +2

Query: 251 PPCCSTECLTGYRCEWCGTTCHAG 322
           P C S   +    CE     CH+G
Sbjct: 116 PVCASNGKIYANHCELHRAACHSG 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,326
Number of Sequences: 438
Number of extensions: 4139
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)