Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0078
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81484-11|CAB03969.2| 365|Caenorhabditis elegans Hypothetical p... 31 0.58
U41991-5|AAA83345.3| 345|Caenorhabditis elegans Seven tm recept... 28 5.4
Z68113-1|CAA92151.1| 321|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z66516-2|CAA91360.1| 418|Caenorhabditis elegans Hypothetical pr... 27 9.4
AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical... 27 9.4
AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical... 27 9.4
AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical... 27 9.4
AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans large-conduct... 27 9.4
AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans large-conduct... 27 9.4
AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans large-conduct... 27 9.4
AF047651-5|AAC02722.2| 702|Caenorhabditis elegans Germline-enha... 27 9.4
>Z81484-11|CAB03969.2| 365|Caenorhabditis elegans Hypothetical
protein C47A10.4 protein.
Length = 365
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = -2
Query: 261 YNTTSEFTVYKYLL--FYIVALIFVMFNVLFCVLWNTLPN 148
YN+ EF+V++++L F + IFV F +FC+ + +P+
Sbjct: 37 YNSNREFSVFEFILINFLFLLSIFVTFIGVFCIGKSNIPH 76
>U41991-5|AAA83345.3| 345|Caenorhabditis elegans Seven tm receptor
protein 1 protein.
Length = 345
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -2
Query: 264 LYNTTSEFTVYKYLLFY--IVALIFVMFNVL 178
LY + S F YKYLL Y I L++ + +VL
Sbjct: 31 LYKSPSSFGAYKYLLTYISIFELVYAVLDVL 61
>Z68113-1|CAA92151.1| 321|Caenorhabditis elegans Hypothetical
protein E03G2.1 protein.
Length = 321
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -2
Query: 237 VYKYLLFYIVAL----IFVMFNVLFCVLWNTLPNCKY 139
+Y Y L+ +A IF FN++FC+L N +C +
Sbjct: 92 IYVYGLYIFIAQSHKQIFSKFNIIFCLLENCARSCHH 128
>Z66516-2|CAA91360.1| 418|Caenorhabditis elegans Hypothetical
protein W03C9.2 protein.
Length = 418
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +2
Query: 173 QNKTLNITKISATI*NNKYL*TVNSDVVLYKFYEYNKTL-----VRQVRYDNIYWPSHHR 337
+N L I K +I + ++ + ++ + FYEY+ ++ + ++ WP R
Sbjct: 249 ENSNLLIEKSKKSIFDGIFMENLKKKLIFHNFYEYSNISKSFRHIKPLEQESSLWPMAMR 308
Query: 338 AKLYRGSNGTSS 373
L G+ G +S
Sbjct: 309 NLLIPGALGANS 320
>AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical
protein Y51A2D.19c protein.
Length = 1131
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 507 RCYWCHLLFTVVSYSLFRFYEDIFLVV*WKAQVYLC 400
R YWC LL ++ + F + LVV W+ +LC
Sbjct: 43 RKYWCFLLSSITT-----FCASMILVVIWRVVTHLC 73
>AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical
protein Y51A2D.19b protein.
Length = 1118
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 507 RCYWCHLLFTVVSYSLFRFYEDIFLVV*WKAQVYLC 400
R YWC LL ++ + F + LVV W+ +LC
Sbjct: 43 RKYWCFLLSSITT-----FCASMILVVIWRVVTHLC 73
>AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical
protein Y51A2D.19a protein.
Length = 1140
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 507 RCYWCHLLFTVVSYSLFRFYEDIFLVV*WKAQVYLC 400
R YWC LL ++ + F + LVV W+ +LC
Sbjct: 43 RKYWCFLLSSITT-----FCASMILVVIWRVVTHLC 73
>AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans
large-conductance calcium-activatedpotassium channel
SLO-1c protein.
Length = 1131
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 507 RCYWCHLLFTVVSYSLFRFYEDIFLVV*WKAQVYLC 400
R YWC LL ++ + F + LVV W+ +LC
Sbjct: 43 RKYWCFLLSSITT-----FCASMILVVIWRVVTHLC 73
>AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans
large-conductance calcium-activatedpotassium channel
SLO-1b protein.
Length = 1118
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 507 RCYWCHLLFTVVSYSLFRFYEDIFLVV*WKAQVYLC 400
R YWC LL ++ + F + LVV W+ +LC
Sbjct: 43 RKYWCFLLSSITT-----FCASMILVVIWRVVTHLC 73
>AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans
large-conductance calcium-activatedpotassium channel
SLO-1a protein.
Length = 1140
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 507 RCYWCHLLFTVVSYSLFRFYEDIFLVV*WKAQVYLC 400
R YWC LL ++ + F + LVV W+ +LC
Sbjct: 43 RKYWCFLLSSITT-----FCASMILVVIWRVVTHLC 73
>AF047651-5|AAC02722.2| 702|Caenorhabditis elegans
Germline-enhanced at-hook proteinprotein 1 protein.
Length = 702
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = -2
Query: 522 FVHGV--RCYWCHLLFTVVSYSLFRFYEDIFLVV*WKAQVYLC--TNVMV 385
FV GV RCY C + V S FRF +D ++ + +LC T VMV
Sbjct: 372 FVKGVNGRCYRCAEIQKPVDMSSFRFVDDSTVIA---IRAHLCDQTRVMV 418
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,227,595
Number of Sequences: 27780
Number of extensions: 283290
Number of successful extensions: 675
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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