Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0078
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    29   0.055
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.3  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 28.7 bits (61), Expect = 0.055
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 444 LHKNETNYTTRP*TASGTNNTLPHAQNISKLKSWGIIRN*NITYALN-NTKDYH 602
           +H  E+       T S     +     I+ ++ +GI+   NI YALN NT++Y+
Sbjct: 69  IHTGESIVVAPSQTLSNKEYNMLRTTAINVIRHFGIVGECNIQYALNPNTEEYY 122


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 470  DTTVNSKWHQ*HLTPCTKHL*TKILGNYSKLK 565
            +TTV+S   + H  P ++H+ + I  +YS L+
Sbjct: 1315 NTTVSSGSSEDHRRPLSEHIYSSIDSDYSTLE 1346


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 322 AFTSQS*AISRIERHIKLAES 384
           AFT  S A++R E+H+ +  S
Sbjct: 186 AFTQASLAMTREEKHLPIGAS 206


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,117
Number of Sequences: 438
Number of extensions: 3985
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)