Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0077
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.86 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.86 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.0  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 520 SDQASMMTTTNRSPAAT--LTRTPMTQTTKPKAASLRSF*SPERN 392
           SD +   T+++   A T  L + P+TQ+ K  A +L +   P RN
Sbjct: 312 SDLSESETSSDEEEADTRPLKKEPITQSNKRTAGNLATREHPSRN 356


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 235 VITSQRSATDAAESKFLCIPFPPVLYLEPT 324
           V T++ +A  A+ S  L +  PP   LEPT
Sbjct: 657 VCTAENAAGTASHSTTLTVNVPPRWILEPT 686


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 404 PGTKRRYDDILS 369
           P TKR YDD+LS
Sbjct: 32  PDTKRLYDDLLS 43


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 235  QTEESQGRYQEEGQARSLRLPTPVQDKSQ*KEKICQQQ 122
            Q ++ Q + Q++ Q    + P P Q + Q +++  QQQ
Sbjct: 1509 QQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQ 1546



 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 535 GRLIISDQASMMTTTNRSPAATLTRTPMTQTTKPKAASL 419
           G+L   DQ  +   ++ S ++    +PM+    P AAS+
Sbjct: 433 GKLPHDDQPPLSPQSDSSSSSRSAESPMSVQVDPMAASV 471


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 428 GKPSKLLKPGTKRRYDDIL 372
           GKPS++ K G  RR+ ++L
Sbjct: 542 GKPSRISKQGLFRRFYNLL 560


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 217 GRYQEEGQARSLRLPTPVQDKSQ*KEKICQQQTVQRDSE 101
           G  QE+ Q +  +  T  Q + Q   K  QQQ  Q+D +
Sbjct: 229 GYIQEQNQQQQQQPLTQQQYQQQIVGKYLQQQAGQQDQQ 267


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 71  AAAEFLQPGGSTSFR 27
           A  EFL PGGS   R
Sbjct: 66  AKCEFLNPGGSVKDR 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,225
Number of Sequences: 438
Number of extensions: 2205
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)