Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0076
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0616 - 18052596-18053779,18053935-18054099,18056236-180562...    28   5.4  

>04_03_0616 -
           18052596-18053779,18053935-18054099,18056236-18056260,
           18057259-18057312,18057354-18057619,18058633-18059371
          Length = 810

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -3

Query: 461 CALQHSFEILLLEIDFFPYQKENKTSFEMNKLQMSKRM-LRLRDRLRVGIPSLKAI 297
           C LQ  FE  +L  +F     ENKT  E+  LQ SKR  + L  RLR+   S  A+
Sbjct: 550 CCLQ--FEAPMLVYEFV----ENKTLQELLDLQRSKRFHVTLGTRLRIAAESADAL 599


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,939,980
Number of Sequences: 37544
Number of extensions: 209940
Number of successful extensions: 417
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)