Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0075
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22320.1 68416.m02819 DNA-directed RNA polymerase, putative s...    31   0.82 

>At3g22320.1 68416.m02819 DNA-directed RNA polymerase, putative
           similar to SP|P19388 DNA-directed RNA polymerase II 23
           kDa polypeptide (EC 2.7.7.6) {Homo sapiens}; contains
           Pfam profiles PF03871: RNA polymerase Rpb5 N-terminal
           domain, PF01191: RNA polymerase Rpb5 C-terminal domain
          Length = 205

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 19/65 (29%), Positives = 36/65 (55%)
 Frame = +3

Query: 78  QNKFRSIFIMNKKKTTD*HRTSNSKESSKWT*RKLFAAFVYLNSTSSISVTRHQIVISQE 257
           +N FR+I ++ ++  T   RT  S+ SSK+       A + +N    + V  HQ++ ++E
Sbjct: 92  ENVFRAILVV-QQNLTPFARTCISEISSKFHLEVFQEAEMLVNIKEHVLVPEHQVLTTEE 150

Query: 258 RQTRL 272
           ++T L
Sbjct: 151 KKTLL 155


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,168,632
Number of Sequences: 28952
Number of extensions: 195283
Number of successful extensions: 316
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)