Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0073
(577 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0684 - 26264540-26264661,26264926-26264989,26267168-262673... 28 4.6
11_06_0275 - 21818071-21818192,21818457-21818520,21820699-218209... 28 4.6
05_01_0089 + 589457-589506,589598-589741,589820-589903,590118-59... 28 4.6
02_05_1110 - 34182943-34182963,34183122-34183301,34184201-341845... 28 4.6
08_01_0694 - 6136025-6136749,6137425-6137971 28 6.1
04_03_0152 + 11913917-11914328,11914391-11914507,11915424-11915587 28 6.1
10_08_0887 - 21311301-21311828,21312001-21312110,21312215-21312392 27 8.1
09_06_0248 + 21848346-21848907,21849026-21849583,21849889-218499... 27 8.1
02_01_0733 - 5477110-5477421,5478146-5478166 27 8.1
>11_06_0684 -
26264540-26264661,26264926-26264989,26267168-26267371,
26268322-26268456,26269174-26269492,26269581-26269631,
26269721-26269864,26270080-26270160,26270252-26270302,
26270392-26270535,26270750-26270833,26270912-26271055,
26271147-26271196
Length = 530
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Frame = -1
Query: 574 GGVSRRGITVPSWKQKQS-------GKDTCEESHGGALF 479
G ++R + VP K+K+S GK TC H GALF
Sbjct: 261 GNITRNKVAVPPRKKKKSSVKEWNFGKPTCTCQHCGALF 299
>11_06_0275 -
21818071-21818192,21818457-21818520,21820699-21820902,
21821852-21821986,21822704-21823022,21823111-21823161,
21823251-21823394,21823610-21823690,21823782-21823832,
21823922-21824065,21824280-21824363,21824442-21824585,
21824677-21824726
Length = 530
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Frame = -1
Query: 574 GGVSRRGITVPSWKQKQS-------GKDTCEESHGGALF 479
G ++R + VP K+K+S GK TC H GALF
Sbjct: 261 GNITRNKVAVPPRKKKKSSVKEWNFGKPTCTCQHCGALF 299
>05_01_0089 +
589457-589506,589598-589741,589820-589903,590118-590261,
590351-590401,590492-590641,591175-591488,592685-592815,
593131-593451,594994-595057,595322-595443
Length = 524
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
Frame = -1
Query: 574 GGVSRRGITVPSWKQKQS-------GKDTCEESHGGALF 479
G ++R + VP K+K+S GK TC H GALF
Sbjct: 169 GNITRNKVAVPPRKKKKSSVKEWNFGKPTCTCQHCGALF 207
>02_05_1110 -
34182943-34182963,34183122-34183301,34184201-34184546,
34184794-34184846
Length = 199
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 558 GGSLCRPGSRSSQERTHARNRMAEL 484
GG CRP SRS ++ H R R ++
Sbjct: 111 GGRQCRPSSRSRRDGVHVRARPQDI 135
>08_01_0694 - 6136025-6136749,6137425-6137971
Length = 423
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 530 EAVRKGHMRGIAWRSSIWVVVNITK 456
+A G M G AWRS++W +V K
Sbjct: 247 KAEEDGGMSGSAWRSTLWSIVGRVK 271
>04_03_0152 + 11913917-11914328,11914391-11914507,11915424-11915587
Length = 230
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 66 DGGDKLTRRQRKMKAWNKNY-ARTRTPANGSGW---WPARATTVATSSSVLP 209
D G T+R RK +AW ++ A P G W + + + ++ S+ LP
Sbjct: 60 DDGSYRTKRSRKYEAWRVDFDAGILVPVKGFNWRALFISMSRAISVSAETLP 111
>10_08_0887 - 21311301-21311828,21312001-21312110,21312215-21312392
Length = 271
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 120 NYARTRTPANGSGWWPARAT 179
NY + A GSGW PARAT
Sbjct: 27 NYNVSDASAYGSGWLPARAT 46
>09_06_0248 +
21848346-21848907,21849026-21849583,21849889-21849980,
21850122-21850167,21850236-21850423
Length = 481
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 340 TEEPLCQDGFLACGDSTCIERGLFCNGEKDCWRW 441
+ E LC+D + G T + F + + DCW W
Sbjct: 215 SNELLCRDIAIVNGLLTIVGLRTFFDSDTDCWSW 248
>02_01_0733 - 5477110-5477421,5478146-5478166
Length = 110
Score = 27.5 bits (58), Expect = 8.1
Identities = 23/76 (30%), Positives = 31/76 (40%)
Frame = +1
Query: 181 LSRRHPVYCLGNTSYTLPGRFVLRYEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQ 360
L+ PV Y + VLR ++ W +K+ K + R+ L Y C
Sbjct: 5 LNENVPVEFQEAHGYAAREKVVLRMRGRS--WTVRLKHTKGRRPRRERAVLRYGWHRFCA 62
Query: 361 DGFLACGDSTCIERGL 408
D LA GD TC R L
Sbjct: 63 DNGLAVGD-TCFFRAL 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,570,300
Number of Sequences: 37544
Number of extensions: 390243
Number of successful extensions: 1330
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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