Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0073
(577 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20) 34 0.072
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 33 0.13
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 33 0.13
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 33 0.22
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 32 0.29
SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07) 32 0.29
SB_15882| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_8835| Best HMM Match : RVT_1 (HMM E-Value=1.2e-36) 31 0.67
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 31 0.67
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34) 30 1.2
SB_34641| Best HMM Match : Mucin (HMM E-Value=4.3) 30 1.2
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38) 29 2.1
SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064) 29 2.1
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 29 2.1
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 29 2.7
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 29 2.7
SB_45816| Best HMM Match : Exo_endo_phos (HMM E-Value=0.004) 29 3.6
SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0) 29 3.6
SB_23397| Best HMM Match : DSL (HMM E-Value=0.00011) 29 3.6
SB_14554| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_3501| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_46881| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_43483| Best HMM Match : RVT_1 (HMM E-Value=9.4e-33) 29 3.6
SB_28723| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_24702| Best HMM Match : C1_4 (HMM E-Value=0.98) 29 3.6
SB_22215| Best HMM Match : Rib_hydrolayse (HMM E-Value=0.035) 29 3.6
SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11) 28 6.3
SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069) 28 6.3
SB_45248| Best HMM Match : rve (HMM E-Value=2.1e-05) 27 8.3
SB_28193| Best HMM Match : rve (HMM E-Value=2.1e-05) 27 8.3
>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
Length = 772
Score = 34.3 bits (75), Expect = 0.072
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +1
Query: 283 AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDC 432
A+ N + + IKP C G C + CI + L+C+G+ C
Sbjct: 67 AIANVSITTRSCAIKPTFSFPGHSCGSGEFQCDNGKCIRKNLYCDGDFAC 116
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 33.5 bits (73), Expect = 0.13
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 355 CQDGFLACGDSTCIERGLFCNGEKDC 432
C+ C D C+ FCNGE DC
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDC 99
Score = 31.5 bits (68), Expect = 0.51
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 373 ACGDSTCIERGLFCNGEKDC 432
AC D TC+ L CNG DC
Sbjct: 117 ACADGTCVTWSLTCNGVSDC 136
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 33.5 bits (73), Expect = 0.13
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 355 CQDGFLACGDSTCIERGLFCNGEKDC 432
C+ C D C+ FCNGE DC
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDC 99
Score = 31.5 bits (68), Expect = 0.51
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 373 ACGDSTCIERGLFCNGEKDC 432
AC D TC+ L CNG DC
Sbjct: 117 ACADGTCVTWSLTCNGVSDC 136
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 32.7 bits (71), Expect = 0.22
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 355 CQDGFLACGDSTCIERGLFCNGEKDC 432
C DG +C D CI R C+G DC
Sbjct: 3207 CADGQFSCDDGLCIARAWKCDGMMDC 3232
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 355 CQDGFLACGDSTCIERGLFCNGEKDC 432
C AC + CI L C+G+ DC
Sbjct: 2370 CTGAQFACDNGRCISTRLLCDGDNDC 2395
Score = 28.7 bits (61), Expect = 3.6
Identities = 8/26 (30%), Positives = 12/26 (46%)
Frame = +1
Query: 355 CQDGFLACGDSTCIERGLFCNGEKDC 432
C AC C+ + C+G+ DC
Sbjct: 2168 CASSEFACESGQCVRKSFVCDGDNDC 2193
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 349 PLCQDGFLACGDSTCIERGLFCNGEKDC 432
P C G C + CI C+GE DC
Sbjct: 823 PPCSAGKFTCKNGHCISLRWKCDGENDC 850
Score = 28.3 bits (60), Expect = 4.8
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 355 CQDGFLACGDSTCIERGLFCNGEKDC 432
C+ G +C + CI C+ E DC
Sbjct: 2209 CEPGHFSCNNGRCINAKWVCDRENDC 2234
Score = 27.5 bits (58), Expect = 8.3
Identities = 9/26 (34%), Positives = 12/26 (46%)
Frame = +1
Query: 355 CQDGFLACGDSTCIERGLFCNGEKDC 432
C C + CI + C+GE DC
Sbjct: 47 CPPTKFLCANGMCIPKSAVCDGENDC 72
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +1
Query: 229 LPGRFVLRYEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGL 408
+PGRF + D D +NC+ + E +C DG + C+ R
Sbjct: 436 IPGRFRCDHRSDCLDGSDE-QNCQNVTRPTPPPVKCRKNERMCADG------NGCVHRRW 488
Query: 409 FCNGEKDC 432
C+GE+DC
Sbjct: 489 ICDGERDC 496
Score = 28.7 bits (61), Expect = 3.6
Identities = 9/26 (34%), Positives = 12/26 (46%)
Frame = +1
Query: 355 CQDGFLACGDSTCIERGLFCNGEKDC 432
C C +S C+ C+GE DC
Sbjct: 343 CPPSDFTCANSQCVPNSFRCDGENDC 368
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 32.3 bits (70), Expect = 0.29
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 355 CQDGFLACGDSTCIERGLFCNGEKDC 432
C + C + C++RGL C+G+K C
Sbjct: 183 CLEDEFGCENGQCVKRGLLCDGDKAC 208
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/76 (23%), Positives = 26/76 (34%)
Frame = +1
Query: 205 CLGNTSYTLPGRFVLRYEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGD 384
C + LPG L ++ C+ VK L + ++ + C C
Sbjct: 170 CAVQPPFALPGHECLE-DEFGCENGQCVKRGLLCDGDKACLDGSDEKHCSCPSNMFLCPS 228
Query: 385 STCIERGLFCNGEKDC 432
CI CN E DC
Sbjct: 229 GECIPTTALCNNENDC 244
>SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07)
Length = 106
Score = 32.3 bits (70), Expect = 0.29
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 355 CQDGFLACGDSTCIERGLFCNGEKDC 432
C C D TCI+R CNG+ DC
Sbjct: 4 CPGSKYECRDGTCIDRNEHCNGKIDC 29
>SB_15882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 933
Score = 31.1 bits (67), Expect = 0.67
Identities = 17/68 (25%), Positives = 27/68 (39%)
Frame = +1
Query: 226 TLPGRFVLRYEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERG 405
T P + R+EKQ C W+D K+ IKP + + C + + T +
Sbjct: 524 TTPSQTAQRFEKQQCIWRDTNNLIKINRVPGNIKP--HKQMVFCHINARSVRNKTTVIND 581
Query: 406 LFCNGEKD 429
C+ D
Sbjct: 582 YICDHSVD 589
>SB_8835| Best HMM Match : RVT_1 (HMM E-Value=1.2e-36)
Length = 979
Score = 31.1 bits (67), Expect = 0.67
Identities = 17/68 (25%), Positives = 27/68 (39%)
Frame = +1
Query: 226 TLPGRFVLRYEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERG 405
T P + R+EKQ C W+D K+ IKP + + C + + T +
Sbjct: 125 TTPSQTAQRFEKQQCIWRDTNNLIKINRVPGNIKP--HKQMVFCHINARSVRNKTTVIND 182
Query: 406 LFCNGEKD 429
C+ D
Sbjct: 183 YICDHSVD 190
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 31.1 bits (67), Expect = 0.67
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 349 PLCQDGFLACGDSTCIERGLFCNGEKDC 432
P+CQ G C +CI+ G C+ DC
Sbjct: 2091 PMCQYGQFRCARGSCIDTGRVCDFTDDC 2118
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 349 PLCQDGFLACGDSTCIERGLFCNGEKDC 432
P C G C D +CI + L C+ + DC
Sbjct: 2244 PPCPFGLFRCTDGSCIMQSLRCDYQNDC 2271
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 376 CGDSTCIERGLFCNGEKDC 432
C CIE FC+G+KDC
Sbjct: 703 CSSGECIEVATFCDGKKDC 721
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/49 (20%), Positives = 23/49 (46%)
Frame = +1
Query: 283 AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKD 429
A+++ ++ ++ P++ C D C + C+ + CNG +D
Sbjct: 635 AIRDIQITTEDCLCTPVIAEPGYKCLDHLFTCNNGECVTKTSRCNGMRD 683
>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
Length = 262
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +1
Query: 295 CKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDC 432
C+ +N E + T C G CG+ CI C+ + DC
Sbjct: 168 CRCQNGEVLVNGQCKTLSGTCAPGQFKCGNGKCIPSSWKCDHDNDC 213
>SB_34641| Best HMM Match : Mucin (HMM E-Value=4.3)
Length = 199
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 87 RRQRKMKAWNKNYARTRTPANGSGWW 164
RR K KAW ART P G+ +W
Sbjct: 44 RRDTKHKAWTTRSARTWVPVTGTPYW 69
>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2956
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = -2
Query: 528 SSQERTHARNRMAELYLGRCQYHKEFSSDPSPTVLFAVTEKTAFNASRVAASEEAILTEW 349
++QE T A+N+MA + CQ +E ++ V V VA ++++ W
Sbjct: 1273 TTQETTLAQNKMAVVATCVCQARQELNAHAPGRVCCPVITSRVLKVGYVARVGQSVVVNW 1332
Query: 348 F 346
F
Sbjct: 1333 F 1333
>SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38)
Length = 130
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 352 LCQDGFLACGDST-CIERGLFCNGEKDC 432
+C+D CG S CI + C+G+ DC
Sbjct: 42 VCRDDQFQCGTSRKCIRKSKICDGKSDC 69
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +1
Query: 259 KQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGD-STCIERGLFCNGEKDC 432
K C + KNC PL +P C+ C + S C++R C+G +DC
Sbjct: 66 KSDCSGGEDEKNCVKPQTPPPTPPL----KPKCRISQRRCDNGSGCVDRMKICDGMRDC 120
>SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064)
Length = 48
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Frame = +1
Query: 352 LCQDGFLACG-----DSTCIERGLFCNGEKDC 432
LC G+ CG + +CI + L CNG DC
Sbjct: 6 LCPSGYFYCGTGPKGEISCINKALRCNGIYDC 37
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 331 LLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDC 432
LL+ C G C S CI L C+G +DC
Sbjct: 15 LLFRVVGCCDPGQFECTSSECIPDVLKCDGSEDC 48
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 349 PLCQDGFLACG-DSTCIERGLFCNGEKDC 432
P C +G CG C+ + L CNG+ DC
Sbjct: 724 PGCGNGEFYCGVPGECVPQTLRCNGQMDC 752
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Frame = +1
Query: 352 LCQDGFLACG-----DSTCIERGLFCNGEKDC 432
LC G+ CG + +CI + L CNG DC
Sbjct: 1529 LCPSGYFYCGTGPKGEISCITKALRCNGIYDC 1560
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 355 CQDGFLACGDSTCIERGLFCNGEKDC 432
C G +C + CI R C+ + DC
Sbjct: 50 CNSGQFSCSNGRCISRSWVCDRDNDC 75
>SB_45816| Best HMM Match : Exo_endo_phos (HMM E-Value=0.004)
Length = 377
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/68 (23%), Positives = 26/68 (38%)
Frame = +1
Query: 226 TLPGRFVLRYEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERG 405
T P + R+ KQ C W+D K+ IKP + + C + + T +
Sbjct: 22 TTPSQTAQRFAKQQCIWRDTNNLIKINRVPGNIKP--HKQMVFCHINARSVRNKTTVIND 79
Query: 406 LFCNGEKD 429
C+ D
Sbjct: 80 YICDHSVD 87
>SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0)
Length = 1311
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +1
Query: 214 NTSY---TLPGRFVLRYEKQTCDWKDAVKNCKLKNKERKIKP 330
NTS+ T P + R+ KQ C W+D K+ IKP
Sbjct: 64 NTSHIPLTTPSQTAQRFAKQQCIWRDTNNLIKINRVPGDIKP 105
>SB_23397| Best HMM Match : DSL (HMM E-Value=0.00011)
Length = 331
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +1
Query: 202 YCLGNTSYTLPGRFVLRYE--KQTC--DWKDAVKNCKLKNKE 315
YC+ S L G +V Y ++ C W DAV NC K KE
Sbjct: 253 YCVSRDS-DLEGHYVCDYVQGRKVCREGWYDAVSNCTKKKKE 293
>SB_14554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/68 (23%), Positives = 26/68 (38%)
Frame = +1
Query: 226 TLPGRFVLRYEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERG 405
T P + R+ KQ C W+D K+ IKP + + C + + T +
Sbjct: 129 TTPSQTAQRFAKQQCIWRDTNNLIKINRVPGNIKP--HKQMVFCHINARSVRNKTTVIND 186
Query: 406 LFCNGEKD 429
C+ D
Sbjct: 187 YICDHSVD 194
>SB_3501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/68 (23%), Positives = 26/68 (38%)
Frame = +1
Query: 226 TLPGRFVLRYEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERG 405
T P + R+ KQ C W+D K+ IKP + + C + + T +
Sbjct: 71 TTPSQTAQRFAKQQCIWRDTNNLIKINRVPGNIKP--HKQMVFCHINARSVRNKTTVIND 128
Query: 406 LFCNGEKD 429
C+ D
Sbjct: 129 YICDHSVD 136
>SB_46881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/68 (23%), Positives = 27/68 (39%)
Frame = +1
Query: 226 TLPGRFVLRYEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERG 405
T P + R+ KQ C W+D K+ + IKP + + C + + T +
Sbjct: 191 TTPSQTAQRFVKQQCIWRDTNNLIKINSVPGNIKP--HKQMVFCHINARSVRNKTTVIND 248
Query: 406 LFCNGEKD 429
C+ D
Sbjct: 249 YICDHSVD 256
>SB_43483| Best HMM Match : RVT_1 (HMM E-Value=9.4e-33)
Length = 919
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/68 (23%), Positives = 26/68 (38%)
Frame = +1
Query: 226 TLPGRFVLRYEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERG 405
T P + R+ KQ C W+D K+ IKP + + C + + T +
Sbjct: 252 TTPSQTAQRFAKQQCIWRDTNNLIKINRAPGDIKP--HKQMVFCHINARSVRNKTTVIND 309
Query: 406 LFCNGEKD 429
C+ D
Sbjct: 310 YICDHSVD 317
>SB_28723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 861
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +1
Query: 214 NTSY---TLPGRFVLRYEKQTCDWKDAVKNCKLKNKERKIKP 330
NTS+ T P + R+ KQ C W+D K+ IKP
Sbjct: 153 NTSHIPLTTPSQTAQRFAKQQCIWRDTNNLIKINRVPGDIKP 194
>SB_24702| Best HMM Match : C1_4 (HMM E-Value=0.98)
Length = 221
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/59 (27%), Positives = 23/59 (38%)
Frame = +1
Query: 244 VLRYEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNG 420
V + ++ D A KNC+ KNK K ++G C C+ F NG
Sbjct: 145 VEHFSEKLADKAKACKNCQSKNKRLKAGNKAVQRAKETRNGCRKCDVHLCVGETAFVNG 203
>SB_22215| Best HMM Match : Rib_hydrolayse (HMM E-Value=0.035)
Length = 186
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 534 SRSSQERTHARNRMAELYLGRCQYHKEFSSD 442
S S T ++ LGRC Y+KEF D
Sbjct: 22 SSSGTSNTGTTRNFKDIVLGRCYYYKEFMLD 52
>SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 376 CGDSTCIERGLFCNGEKDC 432
CG+STCI + C+G DC
Sbjct: 72 CGNSTCIPLTVLCDGLYDC 90
>SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)
Length = 1012
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 468 DNDPNRAPPCDSSHVSFPDCF 530
D+D ++ PPCDS H C+
Sbjct: 124 DSDRDQTPPCDSDHDQTSPCY 144
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 468 DNDPNRAPPCDSSHVSFPDCFCFQDGT 548
D+D ++ PPCDS H C D T
Sbjct: 317 DSDRDQTPPCDSDHDQTSPCDSDHDQT 343
>SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069)
Length = 932
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 472 TTQIELRHAIPRMCPFLTASASRTA 546
TT+ E+ ++PR+ LT +ASRTA
Sbjct: 398 TTKKEISKSVPRLAANLTVAASRTA 422
>SB_45248| Best HMM Match : rve (HMM E-Value=2.1e-05)
Length = 809
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -2
Query: 540 PGSRSSQERTHARNRMAELYLGRCQYHKEFSSDPSPTVLFAVTEKTAFNASRV 382
PG SQ + +R L R QY KE +S + + +T +T ASRV
Sbjct: 753 PGHHRSQAFAESFHRWLAQRLFRAQYSKELASGKTNSQC-CITRRTLSTASRV 804
>SB_28193| Best HMM Match : rve (HMM E-Value=2.1e-05)
Length = 983
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -2
Query: 540 PGSRSSQERTHARNRMAELYLGRCQYHKEFSSDPSPTVLFAVTEKTAFNASRV 382
PG SQ + +R L R QY KE +S + + +T +T ASRV
Sbjct: 927 PGHHRSQAFAESFHRWLAQRLFRAQYSKELASGKTNSQC-CITRRTLSTASRV 978
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,359,112
Number of Sequences: 59808
Number of extensions: 400657
Number of successful extensions: 1773
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1771
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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