Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0073
         (577 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   2.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   6.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   6.6  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    21   8.7  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   8.7  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   8.7  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   8.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   8.7  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 408 KTAFNASRVAASEEAILTEWFFSVQERLYFTL 313
           +TAF   ++ A E    T  + SV ERL   L
Sbjct: 12  RTAFTYEQLVALENKFKTTRYLSVCERLNLAL 43


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 406 DRVQCK*SRRKRGSHLDRVVLQCTREALFYAP 311
           DRV  +   + R   +DR  L C R  + + P
Sbjct: 313 DRVLSELVSKMREMKMDRTELGCLRSIILFNP 344


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 406 DRVQCK*SRRKRGSHLDRVVLQCTREALFYAP 311
           DRV  +   + R   +DR  L C R  + + P
Sbjct: 313 DRVLSELVSKMREMKMDRTELGCLRSIILFNP 344


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 461 TKNFHQIHRQQSFSPLQKRPRS 396
           T+   + H  ++ SP +KRPR+
Sbjct: 4   TRRVKRSHNGKNGSPEEKRPRT 25


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 265 SVSHIEEQTGRATYSLYSRGSTLDDVATVVALAG 164
           SVS       R+T   +++ S +DD  T V + G
Sbjct: 253 SVSSETNHNERSTPRSHAKPSLIDDEPTEVTIGG 286


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 265 SVSHIEEQTGRATYSLYSRGSTLDDVATVVALAG 164
           SVS       R+T   +++ S +DD  T V + G
Sbjct: 253 SVSSETNHNERSTPRSHAKPSLIDDEPTEVTIGG 286


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 265 SVSHIEEQTGRATYSLYSRGSTLDDVATVVALAG 164
           SVS       R+T   +++ S +DD  T V + G
Sbjct: 253 SVSSETNHNERSTPRSHAKPSLIDDEPTEVTIGG 286


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 314 SLFLSLQFFTASFQSQVCFSYRRTN 240
           SLF  LQ +T SF  Q      R+N
Sbjct: 235 SLFCGLQKYTRSFAHQSINKEARSN 259


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -1

Query: 88  LVSLSPPSVTISKRAGEQEARGQSSDT 8
           L+ L P   ++   +GE  +RG S  +
Sbjct: 375 LLGLMPSGSSVHSDSGENNSRGHSGQS 401


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 314 SLFLSLQFFTASFQSQVCFSYRRTN 240
           SLF  LQ +T SF  Q      R+N
Sbjct: 230 SLFCGLQKYTRSFAHQSINKEARSN 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,697
Number of Sequences: 438
Number of extensions: 3593
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)