Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0072
         (706 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0RP53 Cluster: Mur ligase family protein; n=6; Campylo...    38   0.24 
UniRef50_Q8YYW6 Cluster: All0726 protein; n=3; Cyanobacteria|Rep...    35   2.2  
UniRef50_A2FFK9 Cluster: Putative uncharacterized protein; n=1; ...    33   9.0  

>UniRef50_A0RP53 Cluster: Mur ligase family protein; n=6;
           Campylobacter|Rep: Mur ligase family protein -
           Campylobacter fetus subsp. fetus (strain 82-40)
          Length = 478

 Score = 37.9 bits (84), Expect = 0.24
 Identities = 15/41 (36%), Positives = 27/41 (65%)
 Frame = +3

Query: 252 LFILVFYLASIYFRLLQVGTLQINISLGDIMTFSLIL*YFV 374
           LF+L+F++ S++F+  Q+  LQ+  S+G  + FS I  Y +
Sbjct: 99  LFLLIFFVVSLFFKFEQIAVLQLIFSVGFALCFSFIYEYIL 139


>UniRef50_Q8YYW6 Cluster: All0726 protein; n=3; Cyanobacteria|Rep:
           All0726 protein - Anabaena sp. (strain PCC 7120)
          Length = 524

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
 Frame = +3

Query: 174 VINKLFIIRVKFMN--TNYNMTFTYEEALFILVFYLASIYFRLLQVGTLQINISLGDIMT 347
           ++N LF+I + F+   ++ +M  TY    + L+ YLA I+F +  +  L+++ +    ++
Sbjct: 331 LLNLLFLIWLVFLAAYSSTDMENTYNPTFYKLLIYLAPIFFTICSLAYLKLSKNFNSFLS 390

Query: 348 FSLIL*YFVINEINRTLMSNFL 413
             +I    +   IN  L  N++
Sbjct: 391 VFIIACITISITINLNLHLNYI 412


>UniRef50_A2FFK9 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 1012

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 26/112 (23%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
 Frame = +3

Query: 90  LCDITCRSI-DVLY*KV*TLKQCRFAFGTVINKLFIIRVKFMNTNYNMTFTYEEALFILV 266
           +C I C +I D+++  V T ++  F  G +I+  F+ +     TN+ +T     ++ ++ 
Sbjct: 385 ICIILCHAIIDIIFPYVTTHQKYVFVHGKIISYTFLTKYAHYITNF-LTGPAYISISLIK 443

Query: 267 FYLASIYFRLLQVGTLQINISLGDIMTFSLIL*YFVI-NEINRTLMSNFLKI 419
           + +  +   ++ +  L+++ +L  I   +LIL YF++  E+    +S  L I
Sbjct: 444 YKVYPVAGAIIILHGLRLSQTLPHIFCIALILSYFLLFREVGNKSLSTDLFI 495


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 558,504,493
Number of Sequences: 1657284
Number of extensions: 10517793
Number of successful extensions: 21101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20983
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)