Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0072
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-4|CAB03794.1|  283|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z68117-5|CAA92177.2|  303|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF040655-6|AAB95043.2|  296|Caenorhabditis elegans Serpentine re...    27   9.9  

>Z81453-4|CAB03794.1|  283|Caenorhabditis elegans Hypothetical
           protein B0250.6 protein.
          Length = 283

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 144 LKQCRFAFGTVIN-KLFIIRVKFMNTNYNMTFTYEEALFILVFYLASI 284
           L  CRF    V    L I+++ +M T  +  F  +   F+LVF  ASI
Sbjct: 44  LTYCRFGVDLVYTIVLLILKIYYMLTRISNDFIIKNLYFLLVFPAASI 91


>Z68117-5|CAA92177.2|  303|Caenorhabditis elegans Hypothetical
           protein F45E6.1 protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 255 FILVFYLASIYFRLLQVGTLQINISLGDIMTFSLIL*YFV--INEINRTLMSN 407
           + L+F  +   F LL +  L   +  G  +TF++ + YFV  I+ IN+   SN
Sbjct: 111 YYLIFISSMQRFMLLTIEKLGRKLMTGARLTFNMTMLYFVAIISAINKIFASN 163


>AF040655-6|AAB95043.2|  296|Caenorhabditis elegans Serpentine
           receptor, class x protein112 protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = +3

Query: 237 TYEEALFILVF--YLASIYFRLLQVGTLQINISLGDIMTFSLIL---*YFVINEINRTLM 401
           T   +L +LV+  Y   ++    Q+G++++NI L     + L+L      +I  INR L+
Sbjct: 49  TLSNSLILLVYLVYTGPVHLLYTQIGSIELNILLHHFAMYGLMLQGPITQLIITINRVLV 108

Query: 402 SNFLKIK 422
             FL ++
Sbjct: 109 LWFLPLQ 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,145,304
Number of Sequences: 27780
Number of extensions: 258726
Number of successful extensions: 540
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)