Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0072
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   1.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   4.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   4.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 362 IILCHK*DKSDAHVEFFKNK 421
           I+LC K  K D  V FF+ K
Sbjct: 242 ILLCEKVAKEDIQVRFFEEK 261


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 362 IILCHK*DKSDAHVEFFKNK 421
           I+LC K  K D  V FF+ K
Sbjct: 242 ILLCEKVAKEDIQVRFFEEK 261


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 186 LFIIRVKFMNTNYNMTFTYEEALFILVFYLASIYFRLLQVGTLQINISL 332
           L +IR+  +N +YNM    +  +F  +F+L  +  R   +  ++ N  L
Sbjct: 332 LGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFL 380


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/24 (29%), Positives = 18/24 (75%)
 Frame = -2

Query: 171 FQMRIYTVLMFKLFNIIRQWNDML 100
           + ++IYT  + + +N++R++ D+L
Sbjct: 251 YTLKIYTHDIPETYNVVRKFRDVL 274


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/24 (29%), Positives = 18/24 (75%)
 Frame = -2

Query: 171 FQMRIYTVLMFKLFNIIRQWNDML 100
           + ++IYT  + + +N++R++ D+L
Sbjct: 251 YTLKIYTHDIPETYNVVRKFRDVL 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,880
Number of Sequences: 438
Number of extensions: 3635
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)