Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0070
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    29   0.64 
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   0.84 
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    28   0.84 
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    27   1.5  
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.0  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    27   2.6  
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...    26   3.4  
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3...    26   3.4  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    26   4.5  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    26   4.5  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    25   6.0  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.9  
SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma...    25   7.9  

>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 120 FNITLNYFFRLCNLVNSRFINGHNSTWFLKHLVLLWLHQ 236
           F + + Y   L  L+N       N+TW   ++VLLWL Q
Sbjct: 107 FPVGVQYIKELYTLLNE----SSNNTWHFHYIVLLWLSQ 141


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = +3

Query: 90  YFSIFHFW-FYF-NITLNYFFRLC 155
           YFS+F F+ F F ++  N+FFRLC
Sbjct: 113 YFSLFSFFSFLFTSLHFNFFFRLC 136


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 13/58 (22%), Positives = 29/58 (50%)
 Frame = +3

Query: 180 NGHNSTWFLKHLVLLWLHQFTFHRLAPCTTAIPASTGAAITATSPIFAAFFISTNLPV 353
           +G +  W+L +   LW +   ++ ++  +T   +++  ++T TS    A   S  LP+
Sbjct: 723 DGASRAWYLAYAAGLWANDAVYYPVSSSSTTTTSTSTGSVTTTSTTATA---SCTLPI 777


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
 Frame = -3

Query: 230 QPKQDKVFEEPSRIVSVDKAT--VDKVTEP-KKVIQRNIEVEPKV---KDAKVSV-KDIP 72
           +PK+    ++PS+   V   T    KV EP KK  + N + E  V   K  K  V K  P
Sbjct: 437 KPKESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFP 496

Query: 71  ---SRP-SISEDPKKDVSKEKLKTEIT 3
              S P + SED KK+ S+EK K E++
Sbjct: 497 KPASSPVTFSEDVKKEPSEEK-KLEVS 522


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = -3

Query: 242 SKLMQPKQDKVFEEPSRIVSVDKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRP 63
           S  +  K+ K  E  S+    DK +       KKV Q+N E+E K  D K+S  ++P + 
Sbjct: 2   SSKLSKKKLKSLEYRSK--KFDKKSQSLEEHEKKVQQKNEELEKKAAD-KISRDELPEK- 57

Query: 62  SISEDPKKD 36
            +++   KD
Sbjct: 58  QLAQSNDKD 66


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -3

Query: 176 KATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKDVSKEKLKT 12
           K   D+ + P +  Q+ +EV  + KD+K        + ++ E PKK   K   KT
Sbjct: 276 KRKSDEESLPSQKKQKKVEVAKESKDSKQQNVSDKKQVTVKEVPKKLSVKNAAKT 330


>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -3

Query: 290 SCTRWYGSSTGSQAVKSKLM--QPKQDKVFEEPSRIVSVDKATVDKVTEPKKVIQRNIE 120
           S TR      G   VK K+M  +PK  +    P  +V +D    + +T+P  VI + +E
Sbjct: 172 SATRHVLLRQGVLGVKVKIMLPEPKTRQKKSLPDIVVVLDPKEEEPITKPYTVINQPVE 230


>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -1

Query: 202 NQVELCPLIKRLLTRLQS 149
           N+V+LCPL++  +TR+ S
Sbjct: 319 NRVQLCPLVRSTVTRILS 336


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -3

Query: 152 EPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDP 45
           EP+K ++    +    K + V+V+++P+ P   +DP
Sbjct: 305 EPEKEVESTPSILQNFKVSLVNVENVPNEPFKRQDP 340


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 202 NQVELCPLIKRLLTRL 155
           NQVELC +I R+LT +
Sbjct: 395 NQVELCKIIHRMLTEV 410


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -3

Query: 239 KLMQPKQDKVFEEPSRIVSVDKATVDKVTEPKKVIQRNIEVEPKVK-DAKVSVKDI 75
           +++  K+D+     SR VS+   + D    PK V   +  V    K  AK+  +DI
Sbjct: 8   EVIDKKKDEFVTRLSRAVSIPSVSADVTLRPKVVEMADFVVSEFTKLGAKMEKRDI 63


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +3

Query: 111 WFYFNITLNYFFRLCNLVNSRFINGHNSTWFLKHLVLLWLHQFTFHRLA 257
           WF++ +T+ +FF+      S  ++            L W H+F    LA
Sbjct: 270 WFFYMLTIIFFFKEVTADKSEKVSQQKENDDEDRPKLSWKHKFLLFFLA 318


>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/32 (28%), Positives = 22/32 (68%)
 Frame = -3

Query: 176 KATVDKVTEPKKVIQRNIEVEPKVKDAKVSVK 81
           K  +DKV EP+ + +R ++++ ++ D  V+++
Sbjct: 45  KCQLDKVAEPQGLSKRIMDLQGRIYDLNVTME 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,150,649
Number of Sequences: 5004
Number of extensions: 42878
Number of successful extensions: 173
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)