Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0070
(574 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0033 - 7585267-7586028 31 0.65
04_03_0850 - 20269047-20270595,20270708-20270751,20271248-202713... 29 2.0
08_01_0058 + 388989-389102,389226-389337,389457-389483,389787-38... 29 2.6
03_04_0229 - 19018521-19018927,19019132-19019795 29 2.6
06_03_1306 + 29208882-29209547,29209641-29209854,29209947-292100... 29 3.5
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721... 28 4.6
04_01_0317 + 4268418-4269446 28 4.6
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903... 28 6.1
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444... 28 6.1
02_04_0143 + 20172128-20172355,20172452-20173174 27 8.0
>05_03_0033 - 7585267-7586028
Length = 253
Score = 31.1 bits (67), Expect = 0.65
Identities = 24/74 (32%), Positives = 33/74 (44%)
Frame = -3
Query: 230 QPKQDKVFEEPSRIVSVDKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISE 51
+P + E S S K+ TEPK Q + EPK ++K K P R S S+
Sbjct: 158 EPNPETKAEPKSEPKSEPKSEPTPQTEPKAESQPEPKTEPK-SESKAEPK--PERKSYSK 214
Query: 50 DPKKDVSKEKLKTE 9
+ SK + KTE
Sbjct: 215 SKPEPESKPEAKTE 228
>04_03_0850 -
20269047-20270595,20270708-20270751,20271248-20271329,
20274027-20274115
Length = 587
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = -3
Query: 215 KVFEEPSRIVSVDKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKD 36
K +P+ + + +A K V+Q N E + K K KVSV +P + IS K
Sbjct: 196 KRMPKPTAVSNTPEAGAIKKLYTSVVVQTNKERDEKNKFGKVSV--LPEKDVISSSVKST 253
Query: 35 VSKEKLKTE 9
+K K++ +
Sbjct: 254 EAKNKVRNK 262
>08_01_0058 +
388989-389102,389226-389337,389457-389483,389787-389859,
389958-390061,390144-390358,390429-390528,390739-390805,
391628-391716,391810-391948,392057-392157,392921-393088,
393302-393510
Length = 505
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = -3
Query: 188 VSVDKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKDVSKEKLKTE 9
+ A V+ P + Q NI + V + + ++ RPS ++ + DV + K K E
Sbjct: 414 IKASSAAVEVTPSPPVLAQNNILMTKDVAEGNATSEN--DRPSAVDNMEVDVGENKAKME 471
Query: 8 IT 3
+T
Sbjct: 472 VT 473
>03_04_0229 - 19018521-19018927,19019132-19019795
Length = 356
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = -3
Query: 176 KATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISE 51
+A+V ++ EP +E EP+V + VS +++P +PS+ E
Sbjct: 10 EASVSRIEEPPV-----LESEPEVSTSLVSTRELPPKPSLVE 46
>06_03_1306 +
29208882-29209547,29209641-29209854,29209947-29210023,
29210132-29210171,29210254-29210323,29210419-29210488,
29210747-29210995,29212810-29214700,29215458-29215771
Length = 1196
Score = 28.7 bits (61), Expect = 3.5
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Frame = -3
Query: 266 STGSQAVKSKLMQPK-----QDKVFEEPSRIVSVDKATVDKVTEPKKVIQRNIEVEPKVK 102
S+G+ +VK K +Q Q +V ++ + V + ++ E + +QR +E + KV
Sbjct: 347 SSGNDSVKKKNLQVAEALRMQMEVQKQLHEQLEVQRQLQLRIEEHARYLQRILEEQHKVS 406
Query: 101 DAKVSVKDIPSRPSISEDPKKDVSKEKLKTE 9
+ S+ P S E PK K++ ++E
Sbjct: 407 ISSNSLSLKPPAESQPESPKPTSEKKEAESE 437
>04_04_0623 +
26669284-26669421,26670906-26671564,26671948-26672140,
26672220-26672284,26672399-26672609,26673284-26673515,
26674463-26674521,26674651-26674680,26674761-26674850
Length = 558
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 225 WLHQFTFHRLAPCTTAIPASTGAAITATSP 314
W+ +FT P T AIPA+ A A P
Sbjct: 41 WITRFTLQASPPATAAIPAAVAATTRAGVP 70
>04_01_0317 + 4268418-4269446
Length = 342
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 255 APCTTAIPASTGAAITATSPIFAAFFISTNLPVL 356
APC A +T + ATSP F AF +S P+L
Sbjct: 300 APCDDATAETTTTSSAATSPAF-AFAVSDRSPLL 332
>08_02_1147 -
24688686-24689729,24689875-24690036,24690339-24690368,
24690713-24690860,24691302-24691489
Length = 523
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -3
Query: 152 EPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKD 36
EP++ QR+ + EPK + ++VS D P R E PK D
Sbjct: 303 EPRRKHQRSEDDEPKRRQSEVSGDDEPRRRR-QEMPKHD 340
>01_06_1519 +
37942389-37943702,37944142-37944266,37944358-37944499,
37944602-37944848,37946139-37946196,37947629-37947913,
37947988-37948120
Length = 767
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Frame = -3
Query: 176 KATVDKVTEPKKVIQRNIEVEPKVKDA------KVSVKDIPSRP--SISEDPKKDVSKEK 21
KA V+ E K + E EPK ++ K V + P + +E+PK + S E+
Sbjct: 119 KAKVEAAVEETKAEETKAEEEPKAEEPAKEEEPKAEVAAAAAAPPEAGTEEPKAEASSEE 178
Query: 20 LKTE 9
KTE
Sbjct: 179 AKTE 182
>02_04_0143 + 20172128-20172355,20172452-20173174
Length = 316
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/48 (22%), Positives = 25/48 (52%)
Frame = -3
Query: 146 KKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKDVSKEKLKTEIT 3
++V + V+P + PS PS ++D +++ SKE+ +++
Sbjct: 261 QEVAEEEKRVDPDSVQVAAAASSTPSPPSSADDDEEEKSKEEAAADVS 308
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,034,032
Number of Sequences: 37544
Number of extensions: 244048
Number of successful extensions: 761
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -