Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0070
(574 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase pro... 23 1.6
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 3.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 3.8
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 5.0
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 22 5.0
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 22 5.0
AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase p... 21 6.6
AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase p... 21 6.6
AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase pro... 21 8.7
>AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase
protein.
Length = 580
Score = 23.4 bits (48), Expect = 1.6
Identities = 8/42 (19%), Positives = 18/42 (42%)
Frame = -3
Query: 335 YKESCKNWASRCDRSSCTRWYGSSTGSQAVKSKLMQPKQDKV 210
+K+ W + S T W + + V S+ + + D++
Sbjct: 329 FKQLIDRWVANVPNGSVTNWVSGNHDNHRVASRFGRQRGDEI 370
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 232 INLLFTAWLPVLLPYQR 282
I +LF WLP LL R
Sbjct: 295 IKMLFLQWLPCLLRMSR 311
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 232 INLLFTAWLPVLLPYQR 282
I +LF WLP LL R
Sbjct: 295 IKMLFLQWLPCLLRMSR 311
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 232 INLLFTAWLPVLLPYQR 282
I +LF WLP LL R
Sbjct: 295 IKMLFLQWLPCLLRMSR 311
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 232 INLLFTAWLPVLLPYQR 282
I +LF WLP LL R
Sbjct: 295 IKMLFLQWLPCLLRMSR 311
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 232 INLLFTAWLPVLLPYQR 282
I +LF WLP LL R
Sbjct: 295 IKMLFLQWLPCLLRMSR 311
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 232 INLLFTAWLPVLLPYQR 282
I +LF WLP LL R
Sbjct: 295 IKMLFLQWLPCLLRMSR 311
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 3.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 232 INLLFTAWLPVLLPYQR 282
I +LF WLP LL R
Sbjct: 363 IKMLFLQWLPCLLRMSR 379
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 3.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 232 INLLFTAWLPVLLPYQR 282
I +LF WLP LL R
Sbjct: 363 IKMLFLQWLPCLLRMSR 379
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.8 bits (44), Expect = 5.0
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +3
Query: 159 LVNSRFINGHNSTWFLKHL 215
+++S F HN+T +L H+
Sbjct: 305 IISSVFTTRHNATCYLSHV 323
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 21.8 bits (44), Expect = 5.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 275 YGSSTGSQAVKSKLMQPKQDK 213
YGSS G A K K P+Q +
Sbjct: 164 YGSSDGCDARKKKGPTPRQQE 184
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 21.8 bits (44), Expect = 5.0
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +3
Query: 159 LVNSRFINGHNSTWFLKHL 215
+++S F HN+T +L H+
Sbjct: 11 IISSVFTTRHNATCYLSHV 29
>AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 21.4 bits (43), Expect = 6.6
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = -3
Query: 422 LLLQEAVKIGFIDIKTGQLKDP 357
+++ A GF D G L DP
Sbjct: 186 IIIYRAAYFGFYDTARGMLPDP 207
>AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 21.4 bits (43), Expect = 6.6
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = -3
Query: 422 LLLQEAVKIGFIDIKTGQLKDP 357
+++ A GF D G L DP
Sbjct: 186 IIIYRAAYFGFYDTARGMLPDP 207
>AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase
protein.
Length = 588
Score = 21.0 bits (42), Expect = 8.7
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = +1
Query: 235 NLLFTAWLPVLLPYQRVQELRSQRLAQFLQLSLY 336
NLL WLPV Y+ L ++ LY
Sbjct: 432 NLLEKNWLPVHTSYKSGLNLEQEKKDSISHYHLY 465
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,679
Number of Sequences: 438
Number of extensions: 2863
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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