Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0068
         (532 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    40   1e-05
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    33   0.002
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   5.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.9  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 40.3 bits (90), Expect = 1e-05
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
 Frame = -2

Query: 531 DYIAPEVFFQDWVRPLQRTGEASGVIMYEMLIGYPPFLLRITPGDDRK----VMSWRESL 364
           +Y+APEV        +     + GV+M+E+L G PPF    T GD  K    ++   +++
Sbjct: 530 EYVAPEVILNKG-HDISADYWSLGVLMFELLTGTPPF----TGGDPMKTYNIILKGIDAI 584

Query: 363 TFPPEVPISEEARETILRFCSE-PDRRLGSQRG 268
            FP    I+  A   I + C + P  RLG Q+G
Sbjct: 585 EFPRS--ITRNATALIKKLCRDNPAERLGYQKG 615



 Score = 28.7 bits (61), Expect = 0.039
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 244 FFRGVDWSHVRERPAA--ISVEVRSIDDTSNFDDFP 143
           +F G +W  +R R     I   V++  DT+NFD++P
Sbjct: 625 WFDGFNWEGLRARTLEPPIMPRVQNATDTTNFDEYP 660


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 32.7 bits (71), Expect = 0.002
 Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = -2

Query: 528 YIAPEVFFQD-WVRPLQRTGEASGVIMYEMLIGYPPF 421
           Y++PEV  ++ + +P+     A GVI+Y +L+GYPPF
Sbjct: 78  YLSPEVLKKEPYGKPVDIW--ACGVILYILLVGYPPF 112


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 149 IVEVGCVVYGAHFYGYSRRPLPDVRPVD 232
           +V++   V+G H Y       P  +PVD
Sbjct: 628 VVQIDSPVWGRHIYDGRAMGFPLDKPVD 655


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 288  CDRVPNRNAISSLSLPR*WEPR 353
            CDR+     I S+     W+PR
Sbjct: 1664 CDRIKRGTVIRSIRSHSTWDPR 1685


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 149 IVEVGCVVYGAHFYGYSRRPLPDVRPVD 232
           +V++   V+G H Y       P  +PVD
Sbjct: 628 VVQIDSPVWGRHIYDGRAMGFPLDKPVD 655


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +1

Query: 376 PGHNFSVVSWGDSEQKRRVADQHFVHNDPRG 468
           P +N+  V WG + Q      Q+++H    G
Sbjct: 160 PPNNWLSVFWGSAWQWNEERKQYYLHQFATG 190


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 463 GGHYVRNADRLPAVFAPNHP 404
           GG +VR+    P V+  N P
Sbjct: 89  GGQFVRDLIWTPTVYVSNEP 108


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = -2

Query: 522  APEVFFQDWVRPLQRTGEASGVIMYEMLI 436
            +P+  F  W+ PL+  G  +   +Y  ++
Sbjct: 1226 SPQALFISWLPPLEPNGIITKYNLYTRVV 1254


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = -2

Query: 522  APEVFFQDWVRPLQRTGEASGVIMYEMLI 436
            +P+  F  W+ PL+  G  +   +Y  ++
Sbjct: 1222 SPQALFISWLPPLEPNGIITKYNLYTRVV 1250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,824
Number of Sequences: 438
Number of extensions: 3431
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)