Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0067
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 138 8e-34
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 61 1e-10
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 58 1e-09
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 5e-08
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 42 8e-05
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 38 0.002
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 30 0.33
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 28 1.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.0
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.3
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 3.1
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 3.1
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 3.1
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 3.1
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 27 3.1
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 27 3.1
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 3.1
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 3.1
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 3.1
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 3.1
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 4.0
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 4.0
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 4.0
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 26 5.3
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 25 7.1
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 9.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 138 bits (333), Expect = 8e-34
Identities = 72/119 (60%), Positives = 82/119 (68%)
Frame = -3
Query: 638 PKRLLPNPRFGVWKACGIHEPT*TPS*SATWDIRKDLYANTVLSVVPPCTLESPTVCKRK 459
P+ L G+ A GIHE T DIRKDLY N V+S +++
Sbjct: 258 PEALFQPSALGLENA-GIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKE 316
Query: 458 SQALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 282
QALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 317 IQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
Score = 58.0 bits (134), Expect = 1e-09
Identities = 33/66 (50%), Positives = 39/66 (59%)
Frame = -2
Query: 639 AQKASSKPSFWGMESLRHPRAHINSIMKCDVGHP*GLVRQHRIVGGTTMYPGIADRMQKK 460
A +A +PS G+E+ A NSIMKCDV L + GGTTMYPGIADRMQK+
Sbjct: 257 APEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKE 316
Query: 459 ITGSRP 442
I P
Sbjct: 317 IQALAP 322
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 61.3 bits (142), Expect = 1e-10
Identities = 38/116 (32%), Positives = 64/116 (55%)
Frame = -3
Query: 629 LLPNPRFGVWKACGIHEPT*TPS*SATWDIRKDLYANTVLSVVPPCTLESPTVCKRKSQA 450
+L NP +A G+H + D+R LY+N VLS + +A
Sbjct: 265 VLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRA 324
Query: 449 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 282
++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 325 ISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 57.6 bits (133), Expect = 1e-09
Identities = 23/44 (52%), Positives = 34/44 (77%), Gaps = 3/44 (6%)
Frame = -3
Query: 407 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 285
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 389 ERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -2
Query: 585 PRAHINSIMKCDVGHP*GLVRQHRIVGGTTMYPGIADRMQKKITGSRP 442
P+ N I +CDV L+ + GGT++ G + R+Q +++ P
Sbjct: 328 PQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYP 375
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 52.4 bits (120), Expect = 5e-08
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = -3
Query: 395 SVWIGGSILASLSTFQQMWISKQEYDESG 309
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 390 AVWFGGSILASLDNFQHLWVSKQEYDEVG 418
Score = 30.7 bits (66), Expect = 0.19
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Frame = -2
Query: 567 SIMKCDVGHP*GLVRQHRIVGGTTMYPGIADRMQKKI----TGSR 445
SI+ CD L+ + GGT++ PG+++R+Q ++ TGSR
Sbjct: 331 SILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSR 375
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 41.9 bits (94), Expect = 8e-05
Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = -3
Query: 431 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 309
K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 337 KVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 570 NSIMKCDVGHP*GLVRQHRIVGGTTMYPGIADRMQKKI 457
++I DV L R + GG++MY G+ R++K+I
Sbjct: 280 DTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEI 317
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -3
Query: 428 IKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 291
+ +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 374 VNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 29.9 bits (64), Expect = 0.33
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -1
Query: 331 NRSTTSLAPPLYTGSASKRTARRCLHSPRPAAQFRLVISVNLIVRKI 191
NRS +SL+ Y+ SK+T+ L+ R + Q +++ I+R++
Sbjct: 241 NRSGSSLSSNFYSSRLSKKTSLASLNKSRASLQHKIMSLSRNIIRRV 287
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/60 (23%), Positives = 25/60 (41%)
Frame = -3
Query: 476 TVCKRKSQALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 297
T KR+ ++ P I + W G S + F+ ++++EY E GP +
Sbjct: 652 TRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = -1
Query: 397 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTARRCLHSPRPAAQFRLVI 218
TP + PPS+PS+R R S ++ APP ++ + PRP A +
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNP 282
Query: 217 SVN 209
++N
Sbjct: 283 AIN 285
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -3
Query: 389 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 288
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 643 RCPKGFFQTLVLGYGKLAASTSP 575
RCP+G F+ LV+ YG ST+P
Sbjct: 523 RCPRGVFEYLVMPYG---ISTAP 542
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 643 RCPKGFFQTLVLGYGKLAASTSP 575
RCP+G F+ LV+ YG ST+P
Sbjct: 523 RCPRGVFEYLVMPYG---ISTAP 542
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 643 RCPKGFFQTLVLGYGKLAASTSP 575
RCP+G F+ LV+ YG ST+P
Sbjct: 523 RCPRGVFEYLVMPYG---ISTAP 542
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 643 RCPKGFFQTLVLGYGKLAASTSP 575
RCP+G F+ LV+ YG ST+P
Sbjct: 523 RCPRGVFEYLVMPYG---ISTAP 542
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 478 GDSRVHGGTTDNTVLAYKSLRMSHV 552
GDSR H TD ++L+ S+R S +
Sbjct: 277 GDSRTHSAETDRSLLSAMSVRNSRM 301
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = -1
Query: 394 PYGSVDRSS--PPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTARRCLHSPRPAAQFRLV 221
P+ + D SS P +LP+ GS N + T + P + +++K + + P+P + L
Sbjct: 532 PFSATDISSVQPTNLPN---GSTNGTETFIPPVQNSITSNKEAVKPIKNKPKPISFESLS 588
Query: 220 ISVNLIV 200
NLI+
Sbjct: 589 AVGNLII 595
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 643 RCPKGFFQTLVLGYGKLAASTSP 575
RCP+G F+ LV+ YG ST+P
Sbjct: 523 RCPRGVFEYLVMPYG---ISTAP 542
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 643 RCPKGFFQTLVLGYGKLAASTSP 575
RCP+G F+ LV+ YG ST+P
Sbjct: 523 RCPRGVFEYLVMPYG---ISTAP 542
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 643 RCPKGFFQTLVLGYGKLAASTSP 575
RCP+G F+ LV+ YG ST+P
Sbjct: 523 RCPRGVFEYLVMPYG---ISTAP 542
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 643 RCPKGFFQTLVLGYGKLAASTSP 575
RCP+G F+ LV+ YG ST+P
Sbjct: 523 RCPRGVFEYLVMPYG---ISTAP 542
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 643 RCPKGFFQTLVLGYG 599
RCP+G F+ LV+ YG
Sbjct: 523 RCPRGVFEYLVMPYG 537
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 643 RCPKGFFQTLVLGYG 599
RCP+G F+ LV+ YG
Sbjct: 523 RCPRGVFEYLVMPYG 537
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 643 RCPKGFFQTLVLGYG 599
RCP+G F+ LV+ YG
Sbjct: 523 RCPRGVFEYLVMPYG 537
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 375 RSTDPYGVLPLWRSNDLNLHCRWGESL*FSFAYGRRFQGTWWYHRQ 512
R+ GV+ LWR N N+ R+ + +FA+ +F+ + Y ++
Sbjct: 80 RTAAEEGVISLWRGNTANV-LRYFPTQALNFAFKDKFKKMFGYKKE 124
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = -3
Query: 428 IKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 288
I +I PP + ++ W G I + ++WI ++ G ++ K
Sbjct: 563 ISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 330 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 416
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,716
Number of Sequences: 5004
Number of extensions: 57330
Number of successful extensions: 171
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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