Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0067
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             113   2e-27
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.8  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   7.7  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  113 bits (271), Expect = 2e-27
 Identities = 61/95 (64%), Positives = 66/95 (69%)
 Frame = -3

Query: 617 PRFGVWKACGIHEPT*TPS*SATWDIRKDLYANTVLSVVPPCTLESPTVCKRKSQALAPS 438
           P F   +ACGIHE T         DIRKDLYANTVLS             +++  ALAPS
Sbjct: 39  PSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPS 98

Query: 437 TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 333
           TMKIKIIAPPE+KYSVWIGGSILASLSTFQQMWIS
Sbjct: 99  TMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133



 Score = 63.3 bits (147), Expect = 2e-12
 Identities = 34/64 (53%), Positives = 39/64 (60%)
 Frame = -2

Query: 633 KASSKPSFWGMESLRHPRAHINSIMKCDVGHP*GLVRQHRIVGGTTMYPGIADRMQKKIT 454
           +A  +PSF GME+        NSIMKCDV     L     + GGTTMYPGIADRMQK+IT
Sbjct: 34  EALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 93

Query: 453 GSRP 442
              P
Sbjct: 94  ALAP 97


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -1

Query: 568 LHHEVRRGTSVRTCTPTPYCRWYHHVPWNRRP 473
           ++   RR     +C P PY    + +   RRP
Sbjct: 182 VNFSARRNVEYYSCCPEPYPDITYEIRLRRRP 213


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 470 CKRKSQALAPSTMKIKIIAPP 408
           C  +   L P T+K KI  PP
Sbjct: 447 CFAQDDGLCPYTLKHKIRVPP 467



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -3

Query: 263 LPPQPAAGCSIQACN 219
           +P  P  GC  + CN
Sbjct: 427 IPDDPPIGCECKTCN 441


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 494 CTLESPTVCKRKSQALAPSTMKIKIIAP 411
           C L + T C R   A   S +K+  I+P
Sbjct: 166 CALTTLTDCLRSELAQCESNIKVISISP 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,418
Number of Sequences: 438
Number of extensions: 4659
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)