Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0065
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.6  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   3.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.5  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   6.5  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   6.5  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   8.6  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 62  NFQGPQRVSGHRRKC 18
           NF GP R++   R+C
Sbjct: 601 NFHGPHRLAARSRRC 615



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 368 SWYKKQIYGNKSSYLA 321
           +WY   + G+++ YLA
Sbjct: 385 AWYMNTVLGHQNPYLA 400


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 62  NFQGPQRVSGHRRKC 18
           NF GP R++   R+C
Sbjct: 493 NFHGPHRLAARSRRC 507



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 368 SWYKKQIYGNKSSYLA 321
           +WY   + G+++ YLA
Sbjct: 277 AWYMNTVLGHQNPYLA 292


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = -1

Query: 108 YGYEPARHLHVHPSPEFSRSAESIR 34
           + Y P  H   +P+P +   A+  R
Sbjct: 76  WNYSPDNHFEQYPNPTYYNLADPAR 100


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +2

Query: 50  DLENSGEGCTWRCRAGSYPYPQQVS 124
           D  N G+G + +C      YP  +S
Sbjct: 613 DSINEGDGVSVQCTVSKGDYPLNIS 637


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 243 CRM*HCINIGSNK 205
           CR+  C N+G NK
Sbjct: 95  CRLKKCQNVGMNK 107


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 243 CRM*HCINIGSNK 205
           CR+  C N+G NK
Sbjct: 95  CRLKKCQNVGMNK 107


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 69  RDVRGDVAPVRTHIR 113
           +D++G  APV  H+R
Sbjct: 180 KDLQGISAPVEAHLR 194


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,435
Number of Sequences: 336
Number of extensions: 2436
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)