Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0065
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61350.1 68418.m07698 protein kinase family protein contains ...    29   1.9  
At2g19150.1 68415.m02235 pectinesterase family protein contains ...    29   2.5  
At3g18110.1 68416.m02303 pentatricopeptide (PPR) repeat-containi...    27   9.9  

>At5g61350.1 68418.m07698 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 842

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = -2

Query: 449 FLHVDIAVSNDVLNNIPVVPSNFHCILSWYKKQIYGNKSSYLAYNAKK*INWL*CMYLYL 270
           FL  D  +   V ++IP+  SN   +  +   +I+  KS+Y  Y ++   +W+   +  L
Sbjct: 61  FLQTDEDIKTSV-DSIPITDSNASTLPLYLTARIFAGKSTYSFYISRPGRHWIRLHFYPL 119

Query: 269 NY 264
           N+
Sbjct: 120 NH 121


>At2g19150.1 68415.m02235 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 339

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 20  ICGGVRILSADLENSGEGCTWRCRAGSYPYPQQV 121
           I GG+  +    ++  EGCT + R G YP P +V
Sbjct: 185 ISGGIDFIFGGAQSIFEGCTLKLRVGIYP-PNEV 217


>At3g18110.1 68416.m02303 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 1429

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 257 IQNNLSTNTYIITN*FIFLHCKLNNL 334
           ++ + S +  +IT   I LHCK+NNL
Sbjct: 635 LKEHASGSKRLITEALIVLHCKVNNL 660


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,638,975
Number of Sequences: 28952
Number of extensions: 165881
Number of successful extensions: 365
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)