Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0064
         (640 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           25   1.5  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    24   3.5  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    24   3.5  

>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 461 YCENFLQLFIVTAVRPLRMCTPASPPRASRLREPTLWSTIQDSASELS 604
           Y EN  +L   T+  P+     A  P+ S L  PTLW+T+ D   +++
Sbjct: 670 YFEN-RELVFETSDGPVTRSITAGVPQGSILG-PTLWNTMYDGVLDVA 715


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 100 LRESHQYYRAVVRMHLVLLFTVAALLGSC 186
           ++E  +Y   V+    + +FT+A +LG+C
Sbjct: 491 VKEDWKYVALVLDRLFLWIFTIACVLGTC 519


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 479 QLFIVTAVRPLRMCTPASPPRASRLREPTLWSTIQDSASELS 604
           +L   T+  P+     A  P+ S L  PTLW+T+ D   +++
Sbjct: 608 ELVYETSEGPVVRSVTAGVPQGSILG-PTLWNTMYDGVLDIA 648


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 601,800
Number of Sequences: 2352
Number of extensions: 11083
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62723250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)