Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0062
(511 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 175 3e-45
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 96 3e-21
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 91 9e-20
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 85 8e-18
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 63 3e-11
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 59 4e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 51 1e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 33 0.025
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.043
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 29 0.53
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 28 0.93
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 2.9
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 8.7
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 8.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 175 bits (426), Expect = 3e-45
Identities = 78/84 (92%), Positives = 80/84 (95%)
Frame = +3
Query: 252 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 431
GQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107
Query: 432 ASLNPKANREKMTQIMFETFNTPA 503
A LNPK+NREKMTQI+FETFN PA
Sbjct: 108 APLNPKSNREKMTQIIFETFNAPA 131
Score = 99 bits (238), Expect = 2e-22
Identities = 43/49 (87%), Positives = 48/49 (97%)
Frame = +1
Query: 115 DEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRR 261
+EEIAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMG++
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQK 50
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 95.9 bits (228), Expect = 3e-21
Identities = 42/85 (49%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +3
Query: 255 QKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTE 431
QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE
Sbjct: 53 QKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTE 112
Query: 432 ASLNPKANREKMTQIMFETFNTPAM 506
L N+EK+ + +ET N PA+
Sbjct: 113 PPLANIRNKEKIAEYFYETLNVPAL 137
Score = 55.2 bits (127), Expect = 5e-09
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = +1
Query: 133 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM 243
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVM 48
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 91.1 bits (216), Expect = 9e-20
Identities = 37/85 (43%), Positives = 60/85 (70%)
Frame = +3
Query: 237 RDGRYGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 416
+ G KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 417 VLLTEASLNPKANREKMTQIMFETF 491
+LLTE +NP ANREKM + MFE +
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERY 127
Score = 48.0 bits (109), Expect = 8e-07
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 121 EIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 225
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 84.6 bits (200), Expect = 8e-18
Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = +3
Query: 261 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAS 437
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 438 LNPKANREKMTQIMFETFN 494
LNP NRE +IMFE+FN
Sbjct: 133 LNPPENRENTAEIMFESFN 151
Score = 40.7 bits (91), Expect = 1e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +1
Query: 133 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 216
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 62.9 bits (146), Expect = 3e-11
Identities = 29/91 (31%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Frame = +3
Query: 237 RDGRYGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 413
RD + + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 414 PVLLTEASLNPKANREKMTQIMFETFNTPAM 506
P+ +TE NP R MT+++FE +N P++
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSV 147
Score = 35.9 bits (79), Expect = 0.004
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 133 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 228
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 58.8 bits (136), Expect = 4e-10
Identities = 26/67 (38%), Positives = 37/67 (55%)
Frame = +3
Query: 303 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKANREKMTQIMF 482
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 483 ETFNTPA 503
E+ PA
Sbjct: 123 ESLRCPA 129
Score = 39.9 bits (89), Expect = 2e-04
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +1
Query: 118 EEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 219
+E++A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 50.8 bits (116), Expect = 1e-07
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +3
Query: 258 KDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 431
++ YV DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE
Sbjct: 49 RNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITE 108
Query: 432 ASLNPKANREKMTQIMFETFNTPA 503
S NP++ R+++ + FE + PA
Sbjct: 109 PSWNPQSVRQQIMEAAFEQLHVPA 132
Score = 37.1 bits (82), Expect = 0.002
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +1
Query: 118 EEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 219
EEI +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 33.1 bits (72), Expect = 0.025
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +3
Query: 318 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEASLNPKANREKMTQIMFE 485
PI+ G V +W+ ++ W H Y+ L P + +PV L + +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 486 TFNTP 500
P
Sbjct: 172 ECQVP 176
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 32.3 bits (70), Expect = 0.043
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Frame = +3
Query: 378 FYNELRVAPEEHPVLLTE--ASLNPKANREKMTQIMFETFNTP 500
+Y L E+HP+LLT+ A+L P+ + ++ +I ++ NTP
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 28.7 bits (61), Expect = 0.53
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -3
Query: 350 IPVSDDSVFDGVFEGQDTSFALCLISYIRVLLPIPTITP*WRGLPTIEGNTARGASSPAK 171
+P + +V +TSFAL S L PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 170 PALHIP 153
P L+ P
Sbjct: 123 PQLNSP 128
>SPCC1442.07c |||ubiquitin/metalloprotease fusion
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 282
Score = 27.9 bits (59), Expect = 0.93
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 288 SVPHLLHKSPSAHTDHHALMAGPSHDRGEH 199
+VP L P+ HT H + G +H++G H
Sbjct: 148 TVPLLSEMDPAEHTRHDSKTLGLNHNQGAH 177
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 2.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 254 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 162
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 8.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 133 LVVDNGSGMCKAGFAG 180
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 24.6 bits (51), Expect = 8.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 178 GDDAPRAVFPSIVGRPRHQGVMVGM 252
G+ PRA F ++ P H G+++ M
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM 526
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,306,121
Number of Sequences: 5004
Number of extensions: 49989
Number of successful extensions: 125
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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