Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0061
(516 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 181 1e-44
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 173 3e-42
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 162 5e-39
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 156 3e-37
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 155 4e-37
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 135 6e-31
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 134 9e-31
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 131 8e-30
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 127 1e-28
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 110 2e-23
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 101 7e-21
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 91 1e-17
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 81 2e-14
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 78 1e-13
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 77 2e-13
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 74 2e-12
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 71 1e-11
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 71 2e-11
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 69 6e-11
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 68 1e-10
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 61 1e-08
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 61 1e-08
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 61 2e-08
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 60 4e-08
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 59 7e-08
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 58 2e-07
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 58 2e-07
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 54 3e-06
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 52 8e-06
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 46 4e-04
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 46 7e-04
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 42 0.011
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 41 0.019
UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005... 35 1.3
UniRef50_Q3RFY6 Cluster: Putative uncharacterized protein; n=1; ... 35 1.3
UniRef50_Q7SF58 Cluster: Putative uncharacterized protein NCU092... 34 2.2
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 33 2.9
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 5.1
UniRef50_A7BDQ0 Cluster: Putative uncharacterized protein; n=1; ... 32 8.9
UniRef50_Q293C6 Cluster: GA20855-PA; n=1; Drosophila pseudoobscu... 32 8.9
UniRef50_Q96PE2 Cluster: Rho guanine nucleotide exchange factor ... 32 8.9
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 181 bits (440), Expect = 1e-44
Identities = 90/142 (63%), Positives = 101/142 (71%)
Frame = +2
Query: 2 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
RL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV QRL+
Sbjct: 11 RLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLV 70
Query: 182 KVDGKVRTDPTYPAGFMDVVSIEKIMNCFV*SMMLRADSQSTVSPLRRLSTKLCKVKRVA 361
KVDGKVRTDPTYPAG+MDV+++EK F ++ KLCKVK+
Sbjct: 71 KVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQ 130
Query: 362 TGPKNVPYLVTHDGPYHPLPRP 427
G K VP+LVTHDG P P
Sbjct: 131 LGAKGVPFLVTHDGRTIRYPDP 152
Score = 49.6 bits (113), Expect = 4e-05
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = +3
Query: 405 RTIRYPDPLIKSQRFHPVDIATTKIMDFIKFESGN 509
RTIRYPDPLI + VDIA+ KI D+IKF+SGN
Sbjct: 145 RTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGN 179
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 173 bits (420), Expect = 3e-42
Identities = 86/144 (59%), Positives = 102/144 (70%), Gaps = 2/144 (1%)
Frame = +2
Query: 2 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
R+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI QR I
Sbjct: 11 RVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI 70
Query: 182 KVDGKVRTDPTYPAGFMDVVSIEKIMNCFV*SMMLRADSQSTVSPL--RRLSTKLCKVKR 355
K+DGKVRTD TYPAGFMDV+SI+K F ++ + V + KLCKV++
Sbjct: 71 KIDGKVRTDITYPAGFMDVISIDKTGENF--RLIYDTKGRFAVHRITPEEAKYKLCKVRK 128
Query: 356 VATGPKNVPYLVTHDGPYHPLPRP 427
+ G K +P+LVTHD P P
Sbjct: 129 IFVGTKGIPHLVTHDARTIRYPDP 152
Score = 50.8 bits (116), Expect = 2e-05
Identities = 23/36 (63%), Positives = 27/36 (75%)
Frame = +3
Query: 402 ARTIRYPDPLIKSQRFHPVDIATTKIMDFIKFESGN 509
ARTIRYPDPLIK +D+ T KI DFIKF++GN
Sbjct: 144 ARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGN 179
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 162 bits (393), Expect = 5e-39
Identities = 81/144 (56%), Positives = 99/144 (68%), Gaps = 2/144 (1%)
Frame = +2
Query: 2 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
RLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR I
Sbjct: 11 RLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHI 70
Query: 182 KVDGKVRTDPTYPAGFMDVVSIEKIMNCFV*SMMLRADSQSTVSPLR--RLSTKLCKVKR 355
+VDGKVRTD TYPAGFMDVVSI K F ++ + + ++ KLCKV+
Sbjct: 71 QVDGKVRTDKTYPAGFMDVVSIPKTNENF--RLLYDTKGRFRLHSIKDEEAKFKLCKVRS 128
Query: 356 VATGPKNVPYLVTHDGPYHPLPRP 427
+ G K +PYL T+DG P P
Sbjct: 129 IQFGQKGIPYLNTYDGRTIRYPDP 152
Score = 46.4 bits (105), Expect = 4e-04
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +3
Query: 405 RTIRYPDPLIKSQRFHPVDIATTKIMDFIKFESGNFV 515
RTIRYPDPLIK +D+ KI++FIKF+ GN V
Sbjct: 145 RTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 156 bits (378), Expect = 3e-37
Identities = 90/174 (51%), Positives = 107/174 (61%), Gaps = 32/174 (18%)
Frame = +2
Query: 2 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
R+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI QR I
Sbjct: 11 RVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI 70
Query: 182 KVDGKVRTDPTYPAGFMDVVSIEKIMNCF---------------------V*SMMLRADS 298
K+DGKVRTD TYP GFMDV+SI+K F V +++ S
Sbjct: 71 KIDGKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAKVGALVHLRTS 130
Query: 299 QSTVSPLRRLSTKL-----------CKVKRVATGPKNVPYLVTHDGPYHPLPRP 427
+S+ R +S KL CKVK++ G K +P+LVTHD P P
Sbjct: 131 RSSPQQKRAISVKLRFNCSFTQYKLCKVKKILIGTKGIPHLVTHDARTIRYPDP 184
Score = 47.6 bits (108), Expect = 2e-04
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +1
Query: 259 ELFRLIYDVKGRFTIHRITPEEAK 330
E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 97 EHFRLIYDVKGRFTVHRITAEEAK 120
Score = 47.6 bits (108), Expect = 2e-04
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = +3
Query: 402 ARTIRYPDPLIKSQRFHPVDIATTKIMDFIKFESGN 509
ARTIRYPDPLIK +D+ T KI DFIKF++ N
Sbjct: 176 ARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 155 bits (377), Expect = 4e-37
Identities = 75/147 (51%), Positives = 94/147 (63%), Gaps = 2/147 (1%)
Frame = +2
Query: 2 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
RLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV IVK R I
Sbjct: 11 RLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMIVKNRTI 70
Query: 182 KVDGKVRTDPTYPAGFMDVVSIEKIMNCFV*SMMLRADSQSTVSPL--RRLSTKLCKVKR 355
K+DGK+RTD YP GFMDV+SI + F +M + + PL + KLCK+++
Sbjct: 71 KIDGKIRTDTRYPVGFMDVLSIPRTKENF--RLMYNTKRRFCLVPLTAEQAKFKLCKIEK 128
Query: 356 VATGPKNVPYLVTHDGPYHPLPRPTYQ 436
G +PY+VTHDG P P Q
Sbjct: 129 RVLGTGAIPYIVTHDGRTIRYPHPELQ 155
Score = 38.7 bits (86), Expect = 0.078
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 405 RTIRYPDPLIKSQRFHPVDIATTKIMDFIKFESGN 509
RTIRYP P +++ +++ T KI+DF+KF+ GN
Sbjct: 145 RTIRYPHPELQANDTIKLNLETGKIVDFVKFDIGN 179
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 135 bits (326), Expect = 6e-31
Identities = 72/135 (53%), Positives = 92/135 (68%), Gaps = 2/135 (1%)
Frame = +2
Query: 2 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
R+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV KI Q I
Sbjct: 22 RVAALQHWMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDEVKKICMQWFI 80
Query: 182 KVDGKVRTDPTYPAGFMDVVSIEKIMN--CFV*SMMLRADSQSTVSPLRRLSTKLCKVKR 355
KVDGK+RTD P MDV+SI+K+ C + + R + ++P + KLCK+++
Sbjct: 81 KVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGIN-RRFALHRITP-EEVKYKLCKMRK 138
Query: 356 VATGPKNVPYLVTHD 400
+ K +P+LV HD
Sbjct: 139 IFVRAKGIPHLVIHD 153
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 134 bits (325), Expect = 9e-31
Identities = 68/136 (50%), Positives = 88/136 (64%), Gaps = 2/136 (1%)
Frame = +2
Query: 2 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
RL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+RL+
Sbjct: 25 RLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKRRLV 84
Query: 182 KVDGKVRTDPTYPAGFMDVVSIEKIMNCFV*SMMLRADSQSTVSPL--RRLSTKLCKVKR 355
KVDGKVRT+ YP G MDV+ + K F ++ + V + + S KL +V +
Sbjct: 85 KVDGKVRTNYRYPTGLMDVIELGKSNELF--RIIYDCKGRFCVHHIEAKEASFKLLRVNQ 142
Query: 356 VATGPKNVPYLVTHDG 403
G K +P++VTHDG
Sbjct: 143 FKIGAKGIPHVVTHDG 158
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 131 bits (317), Expect = 8e-30
Identities = 65/134 (48%), Positives = 86/134 (64%)
Frame = +2
Query: 2 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
RLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E L I+K+ I
Sbjct: 11 RLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLNILKKNEI 70
Query: 182 KVDGKVRTDPTYPAGFMDVVSIEKIMNCFV*SMMLRADSQSTVSPLRRLSTKLCKVKRVA 361
VDGKVR D +PAG MDV+SI+ + ++ KLCKV RV+
Sbjct: 71 YVDGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVS 130
Query: 362 TGPKNVPYLVTHDG 403
G K +PY+VTHDG
Sbjct: 131 IGSKGIPYIVTHDG 144
Score = 37.9 bits (84), Expect = 0.14
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +3
Query: 405 RTIRYPDPLIKSQRFHPVDIATTKIMDFIKFESGN 509
RTIR+P+ LIKS +D+ K++DFIKF G+
Sbjct: 145 RTIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGS 179
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 127 bits (307), Expect = 1e-28
Identities = 71/144 (49%), Positives = 83/144 (57%), Gaps = 2/144 (1%)
Frame = +2
Query: 2 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
RL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I++Q L+
Sbjct: 8 RLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMILRQGLV 67
Query: 182 KVDGKVRTDPTYPAGFMDVVSIEKIMNCFV*SMMLRADSQSTVSPLRRLST--KLCKVKR 355
VD R D YPAGFMDVV I K + F +M + + L KL KV
Sbjct: 68 HVDNHPRRDGKYPAGFMDVVEIPKTGDRF--RLMYDVKGRFALVNLSEAEAQIKLMKVVN 125
Query: 356 VATGPKNVPYLVTHDGPYHPLPRP 427
+ T VP VTHDG P P
Sbjct: 126 LYTATGRVPVAVTHDGHRIRYPDP 149
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 110 bits (264), Expect = 2e-23
Identities = 50/62 (80%), Positives = 54/62 (87%)
Frame = +2
Query: 11 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 190
APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI Q IK+D
Sbjct: 14 APKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIRMQHFIKMD 73
Query: 191 GK 196
GK
Sbjct: 74 GK 75
Score = 49.6 bits (113), Expect = 4e-05
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = +3
Query: 402 ARTIRYPDPLIKSQRFHPVDIATTKIMDFIKFESGN 509
ARTIRYPDPLIK +D+ T KI DF KF++GN
Sbjct: 116 ARTIRYPDPLIKMNDTIQIDLETGKITDFFKFDTGN 151
Score = 41.1 bits (92), Expect = 0.015
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +1
Query: 280 DVKGRFTIHRITPEEAKYKV 339
D KGRF +HRITPEEAKYK+
Sbjct: 76 DTKGRFAVHRITPEEAKYKL 95
Score = 32.7 bits (71), Expect = 5.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 335 KLCKVKRVATGPKNVPYLVTHDGPYHPLPRP 427
KL KV+++ G K +P+LVTHD P P
Sbjct: 94 KLGKVRKIFVGTKGIPHLVTHDARTIRYPDP 124
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 101 bits (243), Expect = 7e-21
Identities = 58/129 (44%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Frame = +2
Query: 53 APRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAG 226
A RPS GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G
Sbjct: 138 ATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTG 197
Query: 227 FMDVVSIEKIMNCFV*SMMLRADSQSTVSPLRR--LSTKLCKVKRVATGPKNVPYLVTHD 400
MDVV IEK F ++ + + L + KL KV A GP +PY+VTHD
Sbjct: 198 LMDVVRIEKTDQSF--RILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHD 255
Query: 401 GPYHPLPRP 427
P P
Sbjct: 256 SRTIRFPNP 264
Score = 33.1 bits (72), Expect = 3.9
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 402 ARTIRYPDPLIKSQRFHPVDIATTKIMDFIKFESGN 509
+RTIR+P+P IK D+ KI +F ESGN
Sbjct: 256 SRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGN 291
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 91.5 bits (217), Expect = 1e-17
Identities = 42/84 (50%), Positives = 57/84 (67%)
Frame = +2
Query: 2 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
R APK+WMLDK GG +A P++GPHK EC+PL + L+YA E+ I+ ++ I
Sbjct: 11 RKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNI 70
Query: 182 KVDGKVRTDPTYPAGFMDVVSIEK 253
KV+G+VRT+ +P G DVVSIEK
Sbjct: 71 KVNGRVRTNSHFPVGLFDVVSIEK 94
Score = 33.9 bits (74), Expect = 2.2
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +1
Query: 259 ELFRLIYDVKGRFTIHRITPEEAKYKV 339
E FR++Y+V +F +HRI+ EEA Y++
Sbjct: 97 EHFRVLYNVHKKFHLHRISSEEASYRL 123
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 80.6 bits (190), Expect = 2e-14
Identities = 48/137 (35%), Positives = 71/137 (51%), Gaps = 3/137 (2%)
Frame = +2
Query: 2 RLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 178
RL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E KI+ +
Sbjct: 14 RLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGE 73
Query: 179 IKVDGKVRTDPTYPAGFMDVVSIEKIMNCFV*SMMLRADSQSTVSPL--RRLSTKLCKVK 352
I VDG VR +P +P G MDVV I + + + +++ + V P+ K+C++K
Sbjct: 74 IYVDGVVRKEPKFPVGIMDVVEIPRTGDRY--RVVMNEHHRLDVVPISEEEARVKVCRIK 131
Query: 353 RVATGPKNVPYLVTHDG 403
+ HDG
Sbjct: 132 NKTYVRGGNLQITMHDG 148
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 77.8 bits (183), Expect = 1e-13
Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 2/136 (1%)
Frame = +2
Query: 2 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
RL AP W L + + RPS GPH + + LPL++ +R+ LKYA E KI++ I
Sbjct: 12 RLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKI 71
Query: 182 KVDGKVRTDPTYPAGFMDVVSIEKIMNCFV*SMMLRADSQSTVSPLRRLSTKLCKV--KR 355
+DG R + +PAG MDV+SI ++ ++ ++ + ++ + KLCK+ K
Sbjct: 72 LIDGLKRKEYKHPAGLMDVLSIPEMDETYL--VLFDESGRISLKKTDKTDVKLCKIVNKT 129
Query: 356 VATGPKNVPYLVTHDG 403
V G N+ L HDG
Sbjct: 130 VVKG-GNI-QLNLHDG 143
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 77.0 bits (181), Expect = 2e-13
Identities = 39/83 (46%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Frame = +2
Query: 2 RLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 178
R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+ +
Sbjct: 6 RTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGY 65
Query: 179 IKVDGKVRTDPTYPAGFMDVVSI 247
+KVDG VR D +P G MDV+ I
Sbjct: 66 VKVDGVVRRDYKFPVGLMDVIEI 88
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 74.1 bits (174), Expect = 2e-12
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Frame = +2
Query: 2 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ + +
Sbjct: 6 RSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYV 65
Query: 182 KVDGKVRTDPTYPAGFMDVVSIEKIMNCFV*SMMLRADSQSTVSPLR----RLSTKLCKV 349
KVDGKVR D YP G MDV+ + I + + D + + P+R K+C++
Sbjct: 66 KVDGKVRRDYKYPVGLMDVIELTPINEYY----RIIPDPVNFLRPIRIDKSEAGVKVCRI 121
Query: 350 KRVATGPKNVPYLVTHDG 403
+ L HDG
Sbjct: 122 EDKTMVKAGKIQLNLHDG 139
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 71.3 bits (167), Expect = 1e-11
Identities = 41/134 (30%), Positives = 65/134 (48%)
Frame = +2
Query: 2 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
R+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ + +
Sbjct: 8 RVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEGKV 67
Query: 182 KVDGKVRTDPTYPAGFMDVVSIEKIMNCFV*SMMLRADSQSTVSPLRRLSTKLCKVKRVA 361
VDGKVR D Y G D +SI I + +++ D + + P+ S K+CK+
Sbjct: 68 LVDGKVRKDYRYTVGMFDTISIPAINANY--RVVIGMDGKFHLVPVTDASAKICKIVNKT 125
Query: 362 TGPKNVPYLVTHDG 403
L HDG
Sbjct: 126 ALRGGKIQLNLHDG 139
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 70.5 bits (165), Expect = 2e-11
Identities = 32/81 (39%), Positives = 48/81 (59%)
Frame = +2
Query: 5 LNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 184
L AP+ W + + +A +P GPH + LPL++ +RN L YA T E K++ + +
Sbjct: 13 LAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFR 72
Query: 185 VDGKVRTDPTYPAGFMDVVSI 247
VDG VR D +P GFMDV+ +
Sbjct: 73 VDGVVRKDYKFPVGFMDVIEV 93
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 68.9 bits (161), Expect = 6e-11
Identities = 37/131 (28%), Positives = 62/131 (47%)
Frame = +2
Query: 11 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 190
APK W + + +PS G H + L L + +R+ LK A E +I+ + VD
Sbjct: 15 APKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGNVLVD 74
Query: 191 GKVRTDPTYPAGFMDVVSIEKIMNCFV*SMMLRADSQSTVSPLRRLSTKLCKVKRVATGP 370
G+V D +P GFMD++ I K + ++L + ++ + +KLCK+ +T
Sbjct: 75 GRVIKDYKFPVGFMDIIEIPKTGEVY--RVLLDKKGRLQLNKIEENDSKLCKIVNKSTIK 132
Query: 371 KNVPYLVTHDG 403
+ HDG
Sbjct: 133 GGKIQVNLHDG 143
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 68.1 bits (159), Expect = 1e-10
Identities = 33/79 (41%), Positives = 47/79 (59%)
Frame = +2
Query: 11 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 190
AP W + + V+ +PS GPH L +P+ I LR+ YA T E +I+ R+I+VD
Sbjct: 17 APPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILASRVIEVD 76
Query: 191 GKVRTDPTYPAGFMDVVSI 247
G+V TD +P G MDV+ I
Sbjct: 77 GRVVTDYKFPVGLMDVLHI 95
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 61.3 bits (142), Expect = 1e-08
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Frame = +2
Query: 2 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
RL P++W L + ++ +P+ G H C+PL + LR+ L A E +++ R +
Sbjct: 8 RLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLATRQV 67
Query: 182 KVDGKVRTDPTYPAGFMDVVSI-EKIMNCFV-*SMMLRADSQSTVSPLRRLSTKLCKVKR 355
VDG++ TD G MDV+++ E C + + LR S S + ++KLC+V
Sbjct: 68 LVDGRIETDLGRGVGLMDVLTVGEDSFRCILDVNGKLRYRSISD----KAAASKLCRVMG 123
Query: 356 VATGPKNVPYLVTHDG 403
+T + HDG
Sbjct: 124 KSTITDGKTQIHLHDG 139
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 61.3 bits (142), Expect = 1e-08
Identities = 34/82 (41%), Positives = 43/82 (52%)
Frame = +2
Query: 2 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
R AP + K + R GPHK++E +PL I L+ LK T E +I+ +
Sbjct: 6 RFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKV 65
Query: 182 KVDGKVRTDPTYPAGFMDVVSI 247
VDGKVR D YP G MDVV I
Sbjct: 66 LVDGKVRRDYKYPVGLMDVVEI 87
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 60.9 bits (141), Expect = 2e-08
Identities = 35/121 (28%), Positives = 60/121 (49%)
Frame = +2
Query: 2 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
RL AP +W + K + + + GPH LP+ ++LR + A +EV KI+ QR +
Sbjct: 7 RLVAPGSWHIPKKVQKFVMKTAPGPHNAG-ALPVGVWLREHIGLAQNASEVKKILHQRDV 65
Query: 182 KVDGKVRTDPTYPAGFMDVVSIEKIMNCFV*SMMLRADSQSTVSPLRRLSTKLCKVKRVA 361
V+G+ D G D+VSI K+ + + ++ + + P T+LCK++
Sbjct: 66 LVNGRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKT 125
Query: 362 T 364
T
Sbjct: 126 T 126
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 59.7 bits (138), Expect = 4e-08
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Frame = +2
Query: 2 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
R++ PK+W + K + GPH + +PL + LR+ L E +++ + +
Sbjct: 7 RISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSEGNV 66
Query: 182 KVDGKVRTDPTYPAGFMDVVSIEKIMNCFV*SMMLRADSQSTVSPLRRL-STKLCKVK 352
VDG R D +P G MD+++I +N +ML S+ ++ L + KLC+++
Sbjct: 67 LVDGVARKDLRFPVGLMDIITIP--LNNVEYRVMLDGKSRLVLNKLDGTGADKLCRIE 122
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 58.8 bits (136), Expect = 7e-08
Identities = 24/70 (34%), Positives = 43/70 (61%)
Frame = +2
Query: 62 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 241
P+ H + +P++I LR+ LK E+ +I+ ++KVDG++ D +P GFMDV+
Sbjct: 28 PTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNMVKVDGRIVKDRRFPVGFMDVL 87
Query: 242 SIEKIMNCFV 271
SI+ + N ++
Sbjct: 88 SIDTLENDYI 97
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 57.6 bits (133), Expect = 2e-07
Identities = 29/85 (34%), Positives = 46/85 (54%)
Frame = +2
Query: 2 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
R+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R +
Sbjct: 6 RMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQV 64
Query: 182 KVDGKVRTDPTYPAGFMDVVSIEKI 256
++G + TD D++S KI
Sbjct: 65 LLNGHIVTDEHIGIDVFDIISFPKI 89
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 57.6 bits (133), Expect = 2e-07
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Frame = +2
Query: 2 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
RL+ PK+W + + G + GPH LPL + +R+ LK E +I+ + +
Sbjct: 6 RLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKV 65
Query: 182 KVDGKVRTDPTYPAGFMDVVSIEKIMNCFV*SMMLRADSQSTVSPLRRLS-TKLCKVKRV 358
VDG R D +P G DV+++ + + M+ + + L + KLC++
Sbjct: 66 LVDGISRKDLRFPVGLFDVITLPLVNEAY--RMLQDEKGRLVLYKLNETNVNKLCRINNK 123
Query: 359 ATGPKNVPYLVTHDG 403
T L +DG
Sbjct: 124 TTVKGGKIQLNLNDG 138
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 53.6 bits (123), Expect = 3e-06
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Frame = +2
Query: 50 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGF 229
+ P P+ G H + + L+ +R+ LK + E +I+ L+KVDGK + + GF
Sbjct: 23 WGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGF 82
Query: 230 MDVVSIE----KIMNCFV*SMMLRADSQSTVSPLRRLSTKLCKVKRVATGPKNVPYLVTH 397
MDV+ I +++ +++L +++ R S KL KV+ P N L TH
Sbjct: 83 MDVIEINGESYRVVYNDQGALVLMKETK------ERASMKLLKVRSKVIAPGNRIQLGTH 136
Query: 398 DG 403
DG
Sbjct: 137 DG 138
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 52.0 bits (119), Expect = 8e-06
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +2
Query: 5 LNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
L P+ W + K G + +PS GPH +P+ ++LR+ L A EV ++ +
Sbjct: 12 LAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKV 71
Query: 182 KVDGKVRTDPTYPAGFMDVVSIEKI 256
VDG+ D +P G DV++I +I
Sbjct: 72 LVDGRPIKDYKFPVGLFDVLAIPEI 96
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 46.4 bits (105), Expect = 4e-04
Identities = 25/79 (31%), Positives = 40/79 (50%)
Frame = +2
Query: 11 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVD 190
AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L+ VD
Sbjct: 10 APRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVD 69
Query: 191 GKVRTDPTYPAGFMDVVSI 247
GKV + GFMD +++
Sbjct: 70 GKVVKERRRGIGFMDTLTV 88
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 45.6 bits (103), Expect = 7e-04
Identities = 22/81 (27%), Positives = 41/81 (50%)
Frame = +2
Query: 2 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
RL+ P +W +++ + + GPH +PL+I LR+ L YA E + + +
Sbjct: 7 RLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNEDNV 65
Query: 182 KVDGKVRTDPTYPAGFMDVVS 244
++GK +D P G D+++
Sbjct: 66 LINGKAISDEERPVGMFDILA 86
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 41.5 bits (93), Expect = 0.011
Identities = 24/82 (29%), Positives = 35/82 (42%)
Frame = +2
Query: 2 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
R AP W + + G + G H +P + LR+ L T E K + +
Sbjct: 12 RQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIYSGNV 71
Query: 182 KVDGKVRTDPTYPAGFMDVVSI 247
+VDG RT + G MDVV +
Sbjct: 72 EVDGVKRTSLHHGIGLMDVVEL 93
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 40.7 bits (91), Expect = 0.019
Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Frame = +2
Query: 44 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 223
G++ + S+GPH + + L+ ++ A E K+VK + V+GK +P
Sbjct: 25 GIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPI 84
Query: 224 GFMDVVSIEKIMNCFV*SMMLRADSQSTVSPLRR--LSTKLCKVKRVATGPKNVPYLVTH 397
MD +S + ++L + TV + + K+CKV ++ ++T
Sbjct: 85 SLMDTISFPLANKHY--RVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITD 142
Query: 398 D 400
D
Sbjct: 143 D 143
>UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03000514 - Ferroplasma acidarmanus fer1
Length = 317
Score = 34.7 bits (76), Expect = 1.3
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = -3
Query: 247 N*DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQGQALAQLV 77
N +NI + I + N P E LFH F DFVSG ++ I + + + +AQ +
Sbjct: 56 NDENILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGIMKIMYLDRKIAQFI 112
>UniRef50_Q3RFY6 Cluster: Putative uncharacterized protein; n=1;
Xylella fastidiosa Dixon|Rep: Putative uncharacterized
protein - Xylella fastidiosa Dixon
Length = 66
Score = 34.7 bits (76), Expect = 1.3
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Frame = +2
Query: 368 PKNVPYLVTHDG------PYHPLPRPTYQKSTISSSR 460
P+ VPYL TH G P HP P PTY K + + R
Sbjct: 7 PRPVPYLSTHPGSSAHPRPRHPFPIPTYLKDAVFTCR 43
>UniRef50_Q7SF58 Cluster: Putative uncharacterized protein
NCU09252.1; n=1; Neurospora crassa|Rep: Putative
uncharacterized protein NCU09252.1 - Neurospora crassa
Length = 1194
Score = 33.9 bits (74), Expect = 2.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 296 SQSTVSPLRRLSTKLCKVKRVATGPKNVPYLVTHDGPYHPLPRPT 430
S + SP R L L +++ + P L H GP PLPRP+
Sbjct: 557 SPNAKSPARNLGVNLTRLRSRSDAPTLAAMLKNHGGPPAPLPRPS 601
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 33.5 bits (73), Expect = 2.9
Identities = 22/62 (35%), Positives = 34/62 (54%)
Frame = +2
Query: 65 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 244
+T P +L + + L + ++ K L E L I KQ+ +KV+ K + DPT+P D S
Sbjct: 100 NTQPRELLKVVNLDPKIMDKEKKKL--EEELDINKQQKVKVEHKKQLDPTFPRNDFDKFS 157
Query: 245 IE 250
IE
Sbjct: 158 IE 159
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 5.1
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +2
Query: 26 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 187
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
>UniRef50_A7BDQ0 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 368
Score = 31.9 bits (69), Expect = 8.9
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 119 SSGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 15
S GKSP + R+ DRL V+ H+HR V +W
Sbjct: 284 SRGKSPFVADRSHFHDRLLVAGHSHRGVVAILWMW 318
>UniRef50_Q293C6 Cluster: GA20855-PA; n=1; Drosophila
pseudoobscura|Rep: GA20855-PA - Drosophila pseudoobscura
(Fruit fly)
Length = 1177
Score = 31.9 bits (69), Expect = 8.9
Identities = 21/59 (35%), Positives = 28/59 (47%)
Frame = +1
Query: 7 KRSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTPHK 183
K QS+D + + T + Q + L G+ EE +V FDRK SP ET P K
Sbjct: 594 KVHQSLDESKMLALIEGATESTIVQSVQKLTAGEDSEEDDDV-FDRKDSPRFLETNPFK 651
>UniRef50_Q96PE2 Cluster: Rho guanine nucleotide exchange factor 17;
n=21; Euteleostomi|Rep: Rho guanine nucleotide exchange
factor 17 - Homo sapiens (Human)
Length = 2063
Score = 31.9 bits (69), Expect = 8.9
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 362 TGPKNVPYLVTHDGPYHPLPRPTYQKSTISSSRHCNYEDYGL 487
TGP+ +P L D P+H P P K + S YED+ L
Sbjct: 1998 TGPEKLPSLEHRDSPWHRGPAPARPKMLVISGGD-GYEDFRL 2038
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,325,704
Number of Sequences: 1657284
Number of extensions: 11249083
Number of successful extensions: 31595
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 30554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31573
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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