Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0061
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 157 4e-39
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 157 4e-39
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 157 7e-39
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.55
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 2.2
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 2.9
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 29 2.9
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 27 6.8
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 27 6.8
09_03_0171 - 13062794-13064017 27 8.9
07_03_0183 - 14822973-14823139,14823232-14823627,14823861-148240... 27 8.9
06_01_0623 + 4536817-4536868,4537129-4537328,4537401-4537609,453... 27 8.9
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 157 bits (382), Expect = 4e-39
Identities = 78/144 (54%), Positives = 98/144 (68%), Gaps = 2/144 (1%)
Frame = +2
Query: 2 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
RLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR +
Sbjct: 11 RLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHV 70
Query: 182 KVDGKVRTDPTYPAGFMDVVSIEKIMNCFV*SMMLRADSQSTVSPLR--RLSTKLCKVKR 355
VDGKVRTD TYPAGFMDV+SI K + ++ + + ++ KLCKV+
Sbjct: 71 LVDGKVRTDKTYPAGFMDVISIPKTGENY--RLLYDTKGRFRLQSVKDEDAKFKLCKVRS 128
Query: 356 VATGPKNVPYLVTHDGPYHPLPRP 427
V G K +PYL T+DG P P
Sbjct: 129 VQFGQKGIPYLNTYDGRTIRYPDP 152
Score = 51.2 bits (117), Expect = 5e-07
Identities = 22/37 (59%), Positives = 28/37 (75%)
Frame = +3
Query: 405 RTIRYPDPLIKSQRFHPVDIATTKIMDFIKFESGNFV 515
RTIRYPDP+IK+ +D+ T KI+DFIKF+ GN V
Sbjct: 145 RTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVV 181
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 157 bits (382), Expect = 4e-39
Identities = 78/144 (54%), Positives = 98/144 (68%), Gaps = 2/144 (1%)
Frame = +2
Query: 2 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
RLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR +
Sbjct: 11 RLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHV 70
Query: 182 KVDGKVRTDPTYPAGFMDVVSIEKIMNCFV*SMMLRADSQSTVSPLR--RLSTKLCKVKR 355
VDGKVRTD TYPAGFMDV+SI K + ++ + + ++ KLCKV+
Sbjct: 71 LVDGKVRTDKTYPAGFMDVISIPKTGENY--RLLYDTKGRFRLQSVKDEDAKFKLCKVRS 128
Query: 356 VATGPKNVPYLVTHDGPYHPLPRP 427
V G K +PYL T+DG P P
Sbjct: 129 VQFGQKGIPYLNTYDGRTIRYPDP 152
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/37 (62%), Positives = 28/37 (75%)
Frame = +3
Query: 405 RTIRYPDPLIKSQRFHPVDIATTKIMDFIKFESGNFV 515
RTIRYPDPLIK+ +D+ T KI+DFIKF+ GN V
Sbjct: 145 RTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVV 181
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 157 bits (380), Expect = 7e-39
Identities = 79/144 (54%), Positives = 97/144 (67%), Gaps = 2/144 (1%)
Frame = +2
Query: 2 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
RLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+ QR +
Sbjct: 27 RLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISILMQRHV 86
Query: 182 KVDGKVRTDPTYPAGFMDVVSIEKIMNCFV*SMMLRADSQSTVSPLR--RLSTKLCKVKR 355
VDGKVRTD TYPAGFMDVVSI K F ++ + + ++ KLCKV+
Sbjct: 87 MVDGKVRTDKTYPAGFMDVVSIAKTGENF--RLLYDTKGRFRLHSIKDEDAKFKLCKVRS 144
Query: 356 VATGPKNVPYLVTHDGPYHPLPRP 427
V G K +P+L T+DG P P
Sbjct: 145 VQFGQKGIPFLNTNDGRTIRYPDP 168
Score = 52.4 bits (120), Expect = 2e-07
Identities = 23/37 (62%), Positives = 28/37 (75%)
Frame = +3
Query: 405 RTIRYPDPLIKSQRFHPVDIATTKIMDFIKFESGNFV 515
RTIRYPDPLIK+ +D+ T KI+DFIKF+ GN V
Sbjct: 161 RTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIV 197
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 0.55
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 116 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 15
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -1
Query: 129 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 1
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 13 SQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESS----EVCFDRKRSPENCETTP 177
+QS+ V + RCV ETV + P + R+ G+F + + FD+ + +CE P
Sbjct: 894 NQSILVSLSSRCVWKETVCQRPHLLRIKYYGNFDKPLGRFLRDQLFDQNNNCISCELPP 952
>07_03_1291 + 25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 28.7 bits (61), Expect = 2.9
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 455 WMKSLTFDKWVWVA 414
W +S TFDKW+W +
Sbjct: 1295 WERSQTFDKWIWTS 1308
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 161 FSGLRFRSKHTSDDSSGKSPGASTRATCG 75
FSGLR S+ S S SP A++ CG
Sbjct: 9 FSGLRLDSRRLSSSSLPTSPSAASSNGCG 37
>02_05_0672 + 30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3
Query: 235 IHKSSRISRVSPNFPINLYEALFHNFQDFVSG 140
+H+SS ++R++P F + Y L H + ++ G
Sbjct: 1024 LHRSSSVARIAPEFVV--YSELLHTKRSYMHG 1053
>09_03_0171 - 13062794-13064017
Length = 407
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -2
Query: 488 EVHNLRSCNVYWMKSLTFDKWVWVADGTGHHALPSTE 378
EVH L WMK T D ++ D TG A + E
Sbjct: 320 EVHKLNLSQRIWMKVSTIDNKAFLVDCTGFGASLNAE 356
>07_03_0183 -
14822973-14823139,14823232-14823627,14823861-14824005,
14824174-14824380
Length = 304
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -1
Query: 129 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIH 22
++RF+ K G W + G Y P +NIH
Sbjct: 64 WQRFVVKGISGFEKNRFWEDISGASIYKKPRTNNIH 99
>06_01_0623 +
4536817-4536868,4537129-4537328,4537401-4537609,
4538531-4538954
Length = 294
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 414 GWYGPSCVTKYGTFLG 367
GW GP VTK+GT G
Sbjct: 216 GWCGPGVVTKHGTCAG 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,161,015
Number of Sequences: 37544
Number of extensions: 319664
Number of successful extensions: 918
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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