Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0061
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   142   2e-34
AF025464-2|AAN84804.1|  496|Caenorhabditis elegans Prion-like-(q...    27   6.0  
AF025464-1|AAN84805.1|  529|Caenorhabditis elegans Prion-like-(q...    27   6.0  
Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical p...    27   8.0  
Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical p...    27   8.0  
Z81521-3|CAB04225.1|  353|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  142 bits (343), Expect = 2e-34
 Identities = 77/144 (53%), Positives = 91/144 (63%), Gaps = 2/144 (1%)
 Frame = +2

Query: 2   RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLI 181
           RL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  KI+ QR++
Sbjct: 10  RLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVV 69

Query: 182 KVDGKVRTDPTYPAGFMDVVSIEKIMNCFV*SMMLRADSQSTVSPLRRLST--KLCKVKR 355
           +VDGKVRT   +P GFMDVV+IE+    F   M+     +  V  ++      KLCKVK 
Sbjct: 70  RVDGKVRTCHKFPTGFMDVVAIERTNEYF--RMLYDTKGRYVVHRIQAAEADFKLCKVKS 127

Query: 356 VATGPKNVPYLVTHDGPYHPLPRP 427
           V T  K VP L T DG     P P
Sbjct: 128 VRTVNKGVPVLTTTDGRTIRYPDP 151



 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 19/35 (54%), Positives = 23/35 (65%)
 Frame = +3

Query: 405 RTIRYPDPLIKSQRFHPVDIATTKIMDFIKFESGN 509
           RTIRYPDP +K       +I+T KI D +KFE GN
Sbjct: 144 RTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGN 178


>AF025464-2|AAN84804.1|  496|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform a protein.
          Length = 496

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 238 NIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 101
           N H++S+     PN+  N Y+     FQ     Q  + + PQ+ +Q
Sbjct: 210 NYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 255


>AF025464-1|AAN84805.1|  529|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform b protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 238 NIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 101
           N H++S+     PN+  N Y+     FQ     Q  + + PQ+ +Q
Sbjct: 232 NYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 277


>Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical
           protein Y69H2.10b protein.
          Length = 975

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 78  WGPVDGLGAYTPPSLSNIHALGAF 7
           +GP+ GLG +T P+L  +   G F
Sbjct: 75  FGPIPGLGNFTLPTLGTLPGFGNF 98


>Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical
           protein Y69H2.10a protein.
          Length = 572

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 78  WGPVDGLGAYTPPSLSNIHALGAF 7
           +GP+ GLG +T P+L  +   G F
Sbjct: 75  FGPIPGLGNFTLPTLGTLPGFGNF 98


>Z81521-3|CAB04225.1|  353|Caenorhabditis elegans Hypothetical
           protein F32A11.3 protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 58  ETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTP 177
           + V + P+VA  +    + +E S  CF RK+  E  E  P
Sbjct: 145 QQVQQKPKVAPKMLHKMYDDEESGYCFARKKDVEQEEEVP 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,710,279
Number of Sequences: 27780
Number of extensions: 269431
Number of successful extensions: 788
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)