Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0061
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   3.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   3.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   5.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 122 RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 223
           R K+ LTG   L   K RL+  +      P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 132 YFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLS 31
           Y R  +R  T  +H ++    +DG+G Y   S S
Sbjct: 83  YNRMDMRNATYYQHQQDHGSGMDGMGGYRSASPS 116


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -1

Query: 327 SLLRGDTVDCESALNII-D*TKQFIIFSIETTSINPAG*VGSVLTFPSTFMRRCFTIFRT 151
           SLL+ +TV C+ A++++ +   Q ++ S +   I     +  + ++  + + +C T F  
Sbjct: 381 SLLKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGVISLNKLTSYVISGIVKC-TDFVD 439

Query: 150 SFPVKAYFR 124
              VK Y +
Sbjct: 440 KAMVKQYVK 448


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 339 NFVLSLLRGDTVDCES 292
           NF++  LR D  +CE+
Sbjct: 95  NFIVDRLRNDLFECEN 110


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 10  RSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPE 117
           +S++ DV ++WR +  E  NR+    R++    + E
Sbjct: 261 QSETYDVLRSWRNLMDEHSNRTNSDPRMILTEAYTE 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,471
Number of Sequences: 438
Number of extensions: 3155
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)