Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0059
(351 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 120 9e-29
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 112 1e-26
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 71 5e-14
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 61 6e-11
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 2.0
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 2.0
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 2.0
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 2.6
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 25 2.6
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 25 3.4
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac... 25 4.5
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual 24 6.0
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 24 6.0
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 120 bits (288), Expect = 9e-29
Identities = 51/75 (68%), Positives = 60/75 (80%)
Frame = +2
Query: 35 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 214
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 215 HVPRAVFVDLEPTVL 259
+VPR+++VDLEP V+
Sbjct: 61 YVPRSIYVDLEPNVI 75
Score = 61.7 bits (143), Expect = 3e-11
Identities = 26/32 (81%), Positives = 29/32 (90%)
Frame = +1
Query: 256 VDEVRTGTYRQLFHAEQLITGKEDAANNYARG 351
+D+VRTG YR LFH EQLITGKEDA+NNYARG
Sbjct: 75 IDQVRTGPYRDLFHPEQLITGKEDASNNYARG 106
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 112 bits (270), Expect = 1e-26
Identities = 55/80 (68%), Positives = 61/80 (76%), Gaps = 5/80 (6%)
Frame = +2
Query: 35 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 199
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 200 TGAGKHVPRAVFVDLEPTVL 259
TG GK VPR+++VDLEP V+
Sbjct: 60 TGQGKFVPRSIYVDLEPNVI 79
Score = 59.3 bits (137), Expect = 2e-10
Identities = 23/32 (71%), Positives = 29/32 (90%)
Frame = +1
Query: 256 VDEVRTGTYRQLFHAEQLITGKEDAANNYARG 351
+D+VRTG Y+ LFH EQ++TGKEDA+NNYARG
Sbjct: 79 IDQVRTGPYKDLFHPEQMVTGKEDASNNYARG 110
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 70.9 bits (166), Expect = 5e-14
Identities = 35/95 (36%), Positives = 54/95 (56%)
Frame = +2
Query: 38 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 217
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 218 VPRAVFVDLEPTVLMRSALAHTDSCFMQNNLLLVR 322
+PRA+ +DLEP V+ S + N+L+ +
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPENILITK 95
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 60.9 bits (141), Expect = 6e-11
Identities = 32/93 (34%), Positives = 45/93 (48%)
Frame = +2
Query: 35 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 214
MRE + + GQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 215 HVPRAVFVDLEPTVLMRSALAHTDSCFMQNNLL 313
+VPRAV VDLEP + + F +N++
Sbjct: 59 YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNII 91
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 2.0
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 114 STASSLMARCPQTRPSGVETILSTLSSARPELAST 218
ST SSL + ++PS T ST SSA P S+
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSS 207
Score = 23.8 bits (49), Expect = 7.9
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 42 SASLYTLAKPESRSVMPAGSFTAWSTASSL-MARCPQTRPSGVETILSTLSSARPELAST 218
S+S + + S S P+ S ++ T+SSL + P T S T S SS+ AS+
Sbjct: 206 SSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASS 265
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.8 bits (54), Expect = 2.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 286 VCMCQCGPHQHSRFKIDEDSTGYV 215
VC + G Q S KID + TGYV
Sbjct: 1877 VCNDRSGHRQSSVIKIDPNETGYV 1900
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 2.0
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 133 WPDAHRQDHRGWRRFFQHFLQR 198
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 2.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 24 LKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCP 146
L+S +L+ P SR++ P S + STASSL P
Sbjct: 170 LRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSP 210
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 2.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 245 QDRRRQHGVRACQLRSR*RKC*KNRLHPRWSCL 147
QD++ Q R R R RK +RLHP + C+
Sbjct: 7 QDKKNQEIFRISCQRCRQRKIKCDRLHPCFQCV 39
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 25.0 bits (52), Expect = 3.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 88 ITDLDSGLANVYRDALTHFDLSF 20
+T +D GLA YRD TH + +
Sbjct: 146 VTMIDFGLAKKYRDFKTHVHIPY 168
>SPBC3H7.15 |hhp1||serine/threonine protein kinase
Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 24.6 bits (51), Expect = 4.5
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -3
Query: 142 HLAIRLDAVLQAV-KLPAGITDLDSGLANVYRDALTHFDLSF 20
H I+ D L + K + +D GLA YRD TH + +
Sbjct: 128 HRDIKPDNFLMGIGKRGNQVNIIDFGLAKKYRDHKTHLHIPY 169
>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 24.2 bits (50), Expect = 6.0
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -1
Query: 210 PAPVSLKKVLKESSPPPMVLSVGIWPSGWMPCSRQ*SSQQALPIWTPAWPTCTEMHS 40
P P+ LK + E P L V IW P + +PI TPA+P+ H+
Sbjct: 268 PQPILLKPI--EDGP----LQVRIWNPKLYPSDKA----HRMPIITPAYPSMCATHN 314
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 24.2 bits (50), Expect = 6.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 176 SFNTFFSETGAGKHVPRAVFVDLEPTVLMRSALAHTDSCF 295
S N+ FSE A + VF + PT L S L + + F
Sbjct: 367 SVNSPFSEDHADASLTTHVFDPISPTALSNSVLNYDSNNF 406
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,612,860
Number of Sequences: 5004
Number of extensions: 32430
Number of successful extensions: 117
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -