Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0059
(351 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 163 2e-41
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 163 2e-41
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 162 5e-41
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 162 5e-41
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 145 8e-36
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 145 8e-36
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 138 7e-34
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 67 4e-12
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 67 4e-12
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 66 5e-12
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 66 6e-12
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 66 6e-12
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 66 6e-12
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 66 8e-12
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 65 1e-11
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 65 1e-11
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 62 8e-11
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 62 1e-10
At2g20300.1 68415.m02371 protein kinase family protein contains ... 31 0.29
At5g16590.1 68418.m01942 leucine-rich repeat transmembrane prote... 29 0.87
At5g09370.1 68418.m01085 protease inhibitor/seed storage/lipid t... 29 0.87
At4g14510.1 68417.m02236 expressed protein contains Pfam domain,... 29 0.87
At1g52160.1 68414.m05887 metallo-beta-lactamase family protein 29 0.87
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99... 27 2.7
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99... 27 2.7
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99... 27 2.7
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99... 27 2.7
At1g67520.1 68414.m07692 lectin protein kinase family protein co... 27 2.7
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 27 2.7
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 27 3.5
At2g41680.1 68415.m05149 thioredoxin reductase, putative / NADPH... 27 3.5
At3g19180.1 68416.m02435 cell division protein-related weak simi... 27 4.6
At5g22840.1 68418.m02670 protein kinase family protein contains ... 26 6.1
At5g20060.2 68418.m02389 phospholipase/carboxylesterase family p... 26 6.1
At5g20060.1 68418.m02388 phospholipase/carboxylesterase family p... 26 6.1
At1g54610.1 68414.m06228 protein kinase family protein contains ... 26 6.1
At5g13950.1 68418.m01631 expressed protein 26 8.1
At3g13890.1 68416.m01755 myb family transcription factor (MYB26)... 26 8.1
At3g10000.1 68416.m01200 DNA-binding protein-related similar to ... 26 8.1
At2g06645.1 68415.m00740 expressed protein 26 8.1
At1g66690.1 68414.m07580 S-adenosyl-L-methionine:carboxyl methyl... 26 8.1
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 163 bits (397), Expect = 2e-41
Identities = 67/75 (89%), Positives = 75/75 (100%)
Frame = +2
Query: 35 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 214
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 215 HVPRAVFVDLEPTVL 259
HVPRAVFVDLEPTV+
Sbjct: 61 HVPRAVFVDLEPTVI 75
Score = 65.3 bits (152), Expect = 1e-11
Identities = 28/32 (87%), Positives = 31/32 (96%)
Frame = +1
Query: 256 VDEVRTGTYRQLFHAEQLITGKEDAANNYARG 351
+DEVRTGTYRQLFH EQLI+GKEDAANN+ARG
Sbjct: 75 IDEVRTGTYRQLFHPEQLISGKEDAANNFARG 106
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 163 bits (397), Expect = 2e-41
Identities = 67/75 (89%), Positives = 75/75 (100%)
Frame = +2
Query: 35 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 214
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 215 HVPRAVFVDLEPTVL 259
HVPRAVFVDLEPTV+
Sbjct: 61 HVPRAVFVDLEPTVI 75
Score = 65.3 bits (152), Expect = 1e-11
Identities = 28/32 (87%), Positives = 31/32 (96%)
Frame = +1
Query: 256 VDEVRTGTYRQLFHAEQLITGKEDAANNYARG 351
+DEVRTGTYRQLFH EQLI+GKEDAANN+ARG
Sbjct: 75 IDEVRTGTYRQLFHPEQLISGKEDAANNFARG 106
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 162 bits (394), Expect = 5e-41
Identities = 67/75 (89%), Positives = 74/75 (98%)
Frame = +2
Query: 35 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 214
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 215 HVPRAVFVDLEPTVL 259
HVPRAVFVDLEPTV+
Sbjct: 61 HVPRAVFVDLEPTVI 75
Score = 65.3 bits (152), Expect = 1e-11
Identities = 28/32 (87%), Positives = 31/32 (96%)
Frame = +1
Query: 256 VDEVRTGTYRQLFHAEQLITGKEDAANNYARG 351
+DEVRTGTYRQLFH EQLI+GKEDAANN+ARG
Sbjct: 75 IDEVRTGTYRQLFHPEQLISGKEDAANNFARG 106
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 162 bits (394), Expect = 5e-41
Identities = 67/75 (89%), Positives = 74/75 (98%)
Frame = +2
Query: 35 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 214
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 215 HVPRAVFVDLEPTVL 259
HVPRAVFVDLEPTV+
Sbjct: 61 HVPRAVFVDLEPTVI 75
Score = 65.3 bits (152), Expect = 1e-11
Identities = 28/32 (87%), Positives = 31/32 (96%)
Frame = +1
Query: 256 VDEVRTGTYRQLFHAEQLITGKEDAANNYARG 351
+DEVRTGTYRQLFH EQLI+GKEDAANN+ARG
Sbjct: 75 IDEVRTGTYRQLFHPEQLISGKEDAANNFARG 106
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 145 bits (351), Expect = 8e-36
Identities = 60/75 (80%), Positives = 69/75 (92%)
Frame = +2
Query: 35 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 214
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSETGAGK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 215 HVPRAVFVDLEPTVL 259
HVPRAVFVDLEPTV+
Sbjct: 61 HVPRAVFVDLEPTVI 75
Score = 65.3 bits (152), Expect = 1e-11
Identities = 28/32 (87%), Positives = 31/32 (96%)
Frame = +1
Query: 256 VDEVRTGTYRQLFHAEQLITGKEDAANNYARG 351
+DEVRTGTYRQLFH EQLI+GKEDAANN+ARG
Sbjct: 75 IDEVRTGTYRQLFHPEQLISGKEDAANNFARG 106
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 145 bits (351), Expect = 8e-36
Identities = 60/75 (80%), Positives = 69/75 (92%)
Frame = +2
Query: 35 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 214
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSETGAGK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 215 HVPRAVFVDLEPTVL 259
HVPRAVFVDLEPTV+
Sbjct: 61 HVPRAVFVDLEPTVI 75
Score = 65.3 bits (152), Expect = 1e-11
Identities = 28/32 (87%), Positives = 31/32 (96%)
Frame = +1
Query: 256 VDEVRTGTYRQLFHAEQLITGKEDAANNYARG 351
+DEVRTGTYRQLFH EQLI+GKEDAANN+ARG
Sbjct: 75 IDEVRTGTYRQLFHPEQLISGKEDAANNFARG 106
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 138 bits (335), Expect = 7e-34
Identities = 56/75 (74%), Positives = 68/75 (90%)
Frame = +2
Query: 35 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 214
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSET +G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 215 HVPRAVFVDLEPTVL 259
HVPRAVF+DLEPTV+
Sbjct: 61 HVPRAVFLDLEPTVI 75
Score = 65.3 bits (152), Expect = 1e-11
Identities = 28/32 (87%), Positives = 31/32 (96%)
Frame = +1
Query: 256 VDEVRTGTYRQLFHAEQLITGKEDAANNYARG 351
+DEVRTGTYRQLFH EQLI+GKEDAANN+ARG
Sbjct: 75 IDEVRTGTYRQLFHPEQLISGKEDAANNFARG 106
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 66.9 bits (156), Expect = 4e-12
Identities = 31/72 (43%), Positives = 42/72 (58%)
Frame = +2
Query: 35 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 214
MRE + + GQ G QIG WE+ C EHGI P G+ D + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDL--QLERINVYYNEASCGR 58
Query: 215 HVPRAVFVDLEP 250
VPRAV +DLEP
Sbjct: 59 FVPRAVLMDLEP 70
Score = 33.1 bits (72), Expect = 0.053
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 256 VDEVRTGTYRQLFHAEQLITGKEDAANNYARG 351
+D +R+G Y Q F + + G+ A NN+A+G
Sbjct: 73 MDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKG 104
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 66.9 bits (156), Expect = 4e-12
Identities = 31/72 (43%), Positives = 42/72 (58%)
Frame = +2
Query: 35 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 214
MRE + + GQ G QIG WE+ C EHGI P G+ D + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDL--QLERINVYYNEASCGR 58
Query: 215 HVPRAVFVDLEP 250
VPRAV +DLEP
Sbjct: 59 FVPRAVLMDLEP 70
Score = 33.1 bits (72), Expect = 0.053
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 256 VDEVRTGTYRQLFHAEQLITGKEDAANNYARG 351
+D +R+G Y Q F + + G+ A NN+A+G
Sbjct: 73 MDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKG 104
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 66.5 bits (155), Expect = 5e-12
Identities = 33/72 (45%), Positives = 42/72 (58%)
Frame = +2
Query: 35 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 214
MRE + + GQ G QIG WE+ C EHGI GQ D + + N +F+E GK
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDL--QLERINVYFNEASGGK 58
Query: 215 HVPRAVFVDLEP 250
+VPRAV +DLEP
Sbjct: 59 YVPRAVLMDLEP 70
Score = 32.7 bits (71), Expect = 0.071
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 256 VDEVRTGTYRQLFHAEQLITGKEDAANNYARG 351
+D +R+G + Q+F + + G+ A NN+A+G
Sbjct: 73 MDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKG 104
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 66.1 bits (154), Expect = 6e-12
Identities = 33/74 (44%), Positives = 44/74 (59%)
Frame = +2
Query: 38 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 217
RE I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF + +
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHY 60
Query: 218 VPRAVFVDLEPTVL 259
+PRA+ +DLEP V+
Sbjct: 61 IPRALLIDLEPRVI 74
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 66.1 bits (154), Expect = 6e-12
Identities = 33/74 (44%), Positives = 44/74 (59%)
Frame = +2
Query: 38 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 217
RE I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF + +
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHY 60
Query: 218 VPRAVFVDLEPTVL 259
+PRA+ +DLEP V+
Sbjct: 61 IPRALLIDLEPRVI 74
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 66.1 bits (154), Expect = 6e-12
Identities = 31/72 (43%), Positives = 44/72 (61%)
Frame = +2
Query: 35 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 214
MRE + V GQ G QIG+ WE+ C EHG+ P G+ D + + N +++E G+
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGD-SADLQLERINVYYNEASGGR 59
Query: 215 HVPRAVFVDLEP 250
+VPRAV +DLEP
Sbjct: 60 YVPRAVLMDLEP 71
Score = 35.1 bits (77), Expect = 0.013
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 256 VDEVRTGTYRQLFHAEQLITGKEDAANNYARG 351
+D +R+G Y Q+F + + G+ A NN+A+G
Sbjct: 74 MDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKG 105
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 65.7 bits (153), Expect = 8e-12
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Frame = +2
Query: 35 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGD---DSFNTFFSETG 205
MRE + + GQ G QIG+ WE+ C EHGI P G + +G D + N +++E
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTG-----RYVGNSDLQLERVNVYYNEAS 55
Query: 206 AGKHVPRAVFVDLEP 250
G++VPRA+ +DLEP
Sbjct: 56 CGRYVPRAILMDLEP 70
Score = 37.1 bits (82), Expect = 0.003
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 256 VDEVRTGTYRQLFHAEQLITGKEDAANNYARG 351
+D VRTG Y Q+F + + G+ A NN+A+G
Sbjct: 73 MDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKG 104
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 64.9 bits (151), Expect = 1e-11
Identities = 32/72 (44%), Positives = 42/72 (58%)
Frame = +2
Query: 35 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 214
MRE + + GQ G QIG WE+ C EHGI GQ D + + + +F+E GK
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPL--QLERIDVYFNEASGGK 58
Query: 215 HVPRAVFVDLEP 250
+VPRAV +DLEP
Sbjct: 59 YVPRAVLMDLEP 70
Score = 32.7 bits (71), Expect = 0.071
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 256 VDEVRTGTYRQLFHAEQLITGKEDAANNYARG 351
+D +R+G + Q+F + + G+ A NN+A+G
Sbjct: 73 MDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKG 104
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 64.9 bits (151), Expect = 1e-11
Identities = 31/72 (43%), Positives = 43/72 (59%)
Frame = +2
Query: 35 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 214
MRE + + GQ G QIG+ WE+ C EHGI G+ D T + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGD-TADLQLERINVYYNEASGGR 59
Query: 215 HVPRAVFVDLEP 250
+VPRAV +DLEP
Sbjct: 60 YVPRAVLMDLEP 71
Score = 33.5 bits (73), Expect = 0.040
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 256 VDEVRTGTYRQLFHAEQLITGKEDAANNYARG 351
+D +R+G + Q+F + + G+ A NN+A+G
Sbjct: 74 MDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKG 105
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 62.5 bits (145), Expect = 8e-11
Identities = 30/72 (41%), Positives = 43/72 (59%)
Frame = +2
Query: 35 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 214
MRE + + GQ G QIG+ WE+ LEHGI G+ D + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSEL--QLERVNVYYNEASCGR 58
Query: 215 HVPRAVFVDLEP 250
+VPRAV +DLEP
Sbjct: 59 YVPRAVLMDLEP 70
Score = 35.5 bits (78), Expect = 0.010
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 256 VDEVRTGTYRQLFHAEQLITGKEDAANNYARG 351
+D VR+G Y Q+F + + G+ A NN+A+G
Sbjct: 73 MDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKG 104
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 61.7 bits (143), Expect = 1e-10
Identities = 29/72 (40%), Positives = 41/72 (56%)
Frame = +2
Query: 35 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 214
MRE + + GQ G QIG WE+ C EHGI G+ + + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDL--QLERVNVYYNEASCGR 58
Query: 215 HVPRAVFVDLEP 250
VPRAV +DLEP
Sbjct: 59 FVPRAVLMDLEP 70
Score = 35.5 bits (78), Expect = 0.010
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 256 VDEVRTGTYRQLFHAEQLITGKEDAANNYARG 351
+D VR+G Y Q+F + + G+ A NN+A+G
Sbjct: 73 MDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKG 104
>At2g20300.1 68415.m02371 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 744
Score = 30.7 bits (66), Expect = 0.29
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 268 GPHQHSRFKIDEDSTGYVLASSGLAEESVERIVSTPDGLVCG 143
G H+H R+ + ++T +S + VE + STP G CG
Sbjct: 75 GHHRHRRWHLRRNATAVSPSSHDCQQTCVEPLTSTPFGSPCG 116
>At5g16590.1 68418.m01942 leucine-rich repeat transmembrane protein
kinase, putative
Length = 625
Score = 29.1 bits (62), Expect = 0.87
Identities = 25/73 (34%), Positives = 34/73 (46%)
Frame = -1
Query: 345 GIVVGRIFLTSNKLFCMKQLSVCASADLINTVGSRSTKTARGTCLPAPVSLKKVLKESSP 166
GIV+G F+ LF + +C V SRS + A P P S V KES+
Sbjct: 249 GIVIG-CFVLLLVLFLIV-FCLCRKKKKEQVVQSRSIEAA-----PVPTSSAAVAKESNG 301
Query: 165 PPMVLSVGIWPSG 127
PP V++ G +G
Sbjct: 302 PPAVVANGASENG 314
>At5g09370.1 68418.m01085 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to lipid
transfer protein - Hordeum vulgare, EMBL:AF109195;
contains Pfam protease inhibitor/seed storage/LTP family
domain PF00234
Length = 158
Score = 29.1 bits (62), Expect = 0.87
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = -1
Query: 204 PVSLKKVLKESSPPPMVLSVGIWPSGWMPCSRQ*SSQQALPI 79
PVS L +SPP +W SGW P +PI
Sbjct: 101 PVSACDSLPPASPPTANGQAPVWGSGWAPAPSPSKGNSLIPI 142
>At4g14510.1 68417.m02236 expressed protein contains Pfam domain,
PF04581: Protein of unknown function (DUF578)
Length = 932
Score = 29.1 bits (62), Expect = 0.87
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 113 EHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLE 247
E GIQ +G + ++ + G D +T F + A P FV+L+
Sbjct: 881 EGGIQANGSL-SETDVEFGSDESDTDFGDNSASSTTPETTFVELQ 924
>At1g52160.1 68414.m05887 metallo-beta-lactamase family protein
Length = 890
Score = 29.1 bits (62), Expect = 0.87
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = -3
Query: 241 IDEDSTGYVLASSGLAEESVERIVSTPDGLVCGHLAIRLDAVLQAVKLPAGITD---LDS 71
+ E G+ + SG + E + ++ D + H A DA+++ T +D
Sbjct: 748 VGEQILGWKMVYSGDSRPCPETVEASRDATILIHEATFEDALIEEALAKNHSTTKEAIDV 807
Query: 70 G-LANVYRDALTHF 32
G ANVYR LTHF
Sbjct: 808 GSAANVYRIVLTHF 821
>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.5 bits (58), Expect = 2.7
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = -3
Query: 241 IDEDSTGYVLASSGLAEESVERIVSTPDGLVCGHLAIRLDAVLQAVKLPAGITDLDSGLA 62
I E S G +A+ V R V T +G + +DA++QA KLP I + G+
Sbjct: 236 IVEQSGGQYHVLVIIADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLV--GVG 293
Query: 61 NVYRDALTHFD 29
+ D + FD
Sbjct: 294 DGPWDMMREFD 304
>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.5 bits (58), Expect = 2.7
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = -3
Query: 241 IDEDSTGYVLASSGLAEESVERIVSTPDGLVCGHLAIRLDAVLQAVKLPAGITDLDSGLA 62
I E S G +A+ V R V T +G + +DA++QA KLP I + G+
Sbjct: 236 IVEQSGGQYHVLVIIADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLV--GVG 293
Query: 61 NVYRDALTHFD 29
+ D + FD
Sbjct: 294 DGPWDMMREFD 304
>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.5 bits (58), Expect = 2.7
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = -3
Query: 241 IDEDSTGYVLASSGLAEESVERIVSTPDGLVCGHLAIRLDAVLQAVKLPAGITDLDSGLA 62
I E S G +A+ V R V T +G + +DA++QA KLP I + G+
Sbjct: 236 IVEQSGGQYHVLVIIADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLV--GVG 293
Query: 61 NVYRDALTHFD 29
+ D + FD
Sbjct: 294 DGPWDMMREFD 304
>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.5 bits (58), Expect = 2.7
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = -3
Query: 241 IDEDSTGYVLASSGLAEESVERIVSTPDGLVCGHLAIRLDAVLQAVKLPAGITDLDSGLA 62
I E S G +A+ V R V T +G + +DA++QA KLP I + G+
Sbjct: 236 IVEQSGGQYHVLVIIADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLV--GVG 293
Query: 61 NVYRDALTHFD 29
+ D + FD
Sbjct: 294 DGPWDMMREFD 304
>At1g67520.1 68414.m07692 lectin protein kinase family protein
contains Pfam domains PF00069: Protein kinase domain and
PF01453: Lectin (probable mannose binding)
Length = 587
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +2
Query: 161 GGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVLMRSALAHTDSCFMQNN 307
G G + +NT+ + G+ H PR +++ ++ L SC + N
Sbjct: 350 GTGCEIWNTYPTNKGSASHSPRTIYIRGNDQEMLLRELGIDRSCIHKRN 398
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -1
Query: 273 SADLINTVGSRSTKTARGTCLPAPVSLKKVLKESSPP 163
++D+ + SR T+T+ +P ++ K +K PP
Sbjct: 776 TSDVSGVISSRQTRTSPAPVMPMKLNQKTKIKSDEPP 812
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 146 WASGHQAGCRAPGSKAPSRHYRSGLR 69
W+SGHQ CR G + ++GLR
Sbjct: 90 WSSGHQRNCRDYGITTLTPSAKNGLR 115
>At2g41680.1 68415.m05149 thioredoxin reductase, putative /
NADPH-dependent thioredoxin reductase, putative The last
2 exons encode thioredoxin. There is an EST match to
exons 5-7, and the distance between exon 7 and exon 8 is
only 90bp. It is unlikely this is two separate genes,
but more likely a hybrid protein.
Length = 529
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 244 KIDEDSTGYVLASSGLAEESVERIVSTPD 158
+++ DS+GYVL G + SVE + + D
Sbjct: 336 QVELDSSGYVLVREGTSNTSVEGVFAAGD 364
>At3g19180.1 68416.m02435 cell division protein-related weak
similarity to cell division protein Ftn2 [Synechococcus
sp. PCC 7942] GI:16226084
Length = 819
Score = 26.6 bits (56), Expect = 4.6
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 18 KKLKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCPQTR 155
K+L+S SA ++ ESRS S AW S++A P TR
Sbjct: 427 KQLESNSDSAVRNSILGKESRSTSATPSLEAWL-MESVLANFPDTR 471
>At5g22840.1 68418.m02670 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 538
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/71 (23%), Positives = 29/71 (40%)
Frame = +2
Query: 134 GQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVLMRSALAHTDSCFMQNNLL 313
G MP +GG FF+ G +H+ R F L + + + D+ MQ+ +
Sbjct: 391 GMMPRKIALGGRHS--RDFFNRQGELRHIRRLRFWPLSKVLTDKYDFSEEDAIAMQDFIT 448
Query: 314 LVRKMRPTTMP 346
+ + P P
Sbjct: 449 PILQFVPEKRP 459
>At5g20060.2 68418.m02389 phospholipase/carboxylesterase family
protein similar to lysophospholipase II [Mus musculus]
GI:4589453; contains Pfam profile PF02230:
Phospholipase/Carboxylesterase family
Length = 252
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 171 SPPPMVLSVGIWPSGWMPCSR 109
+P P+ LS I SGW+PC++
Sbjct: 149 NPYPINLSAIIGLSGWLPCAK 169
>At5g20060.1 68418.m02388 phospholipase/carboxylesterase family
protein similar to lysophospholipase II [Mus musculus]
GI:4589453; contains Pfam profile PF02230:
Phospholipase/Carboxylesterase family
Length = 252
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 171 SPPPMVLSVGIWPSGWMPCSR 109
+P P+ LS I SGW+PC++
Sbjct: 149 NPYPINLSAIIGLSGWLPCAK 169
>At1g54610.1 68414.m06228 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 572
Score = 26.2 bits (55), Expect = 6.1
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +1
Query: 256 VDEVRTGTYRQLFHAEQLITGK 321
+D++ GTY ++ A+ ++TGK
Sbjct: 121 IDKIGQGTYSNVYKAKDMLTGK 142
>At5g13950.1 68418.m01631 expressed protein
Length = 939
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -2
Query: 170 LHPRWS--CLWASGHQAGCRAPGSKAPSRHYRSGLRLGQRVQRCTH 39
L+ W +WA+ + GC + GS+ + S LR+ ++ H
Sbjct: 788 LNQNWQFRSMWANTNGVGCTSQGSQTGTERDPSLLRVANNAEQIIH 833
>At3g13890.1 68416.m01755 myb family transcription factor (MYB26)
similar to myb-related transcription factor GI:1167486
from [Lycopersicon esculentum]; contains myb DNA binding
domain: PF0049
Length = 367
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -3
Query: 349 HGHSCWPHLPYQ**VVLHETTVCMCQCG 266
+GH CW +P H C+ +CG
Sbjct: 32 YGHGCWSSVPKHAGTYTHIHGFCLQRCG 59
>At3g10000.1 68416.m01200 DNA-binding protein-related similar to
GT-2 factor [Arabidopsis thaliana GI:416490
Length = 496
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Frame = +2
Query: 122 IQPDGQMPTDKTIGGGDDSF---NTFFSETGAGK 214
I+PD PT++ G G D N F E GK
Sbjct: 360 IRPDSSSPTERINGNGSDKMMADNEFADEGNKGK 393
>At2g06645.1 68415.m00740 expressed protein
Length = 163
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 143 PTDKTIGGGDDSFNTFFSETGAGKHVPRAV 232
PT +T G DD +FS G HV AV
Sbjct: 83 PTTETNGDVDDGAGKYFSSEVEGVHVELAV 112
>At1g66690.1 68414.m07580 S-adenosyl-L-methionine:carboxyl
methyltransferase family protein similar to
defense-related protein cjs1 [Brassica
carinata][GI:14009292][Mol Plant Pathol (2001)
2(3):159-169]
Length = 353
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 142 HLAIRLDAVLQAVKLPAGITDLDSGLAN 59
H+A+ A L K+P GI D DS L N
Sbjct: 140 HIAVMSYAFLFTSKIPKGIMDRDSPLWN 167
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,821,655
Number of Sequences: 28952
Number of extensions: 191254
Number of successful extensions: 678
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -