Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0058
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 197 9e-52
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 100 3e-22
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 94 1e-20
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 68 1e-12
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 67 2e-12
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 54 1e-08
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 53 3e-08
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.10
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 29 0.73
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 28 1.3
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 28 1.3
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 27 3.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.0
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.9
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 3.9
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 5.2
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 5.2
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po... 25 9.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 197 bits (481), Expect = 9e-52
Identities = 99/162 (61%), Positives = 112/162 (69%)
Frame = +1
Query: 115 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRRTLM*EMRHRAK 294
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMG++ ++K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 295 XXXXXXXXXXXXXXXLTGMTWRRFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 474
+ WHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 475 IMFETFNTPAMSLASKPVLSLYAFRSFHRYRAWTSGDGVFHT 600
I+FETFN PA +A + VLSLYA SGDGV HT
Sbjct: 122 IIFETFNAPAFYVAIQAVLSLYASGRTTGI-VLDSGDGVTHT 162
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 99.5 bits (237), Expect = 3e-22
Identities = 50/138 (36%), Positives = 74/138 (53%), Gaps = 1/138 (0%)
Frame = +1
Query: 133 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRRTLM*EMRHRAKXXXXXX 312
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM ++ + +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 313 XXXXXXXXXLTGMTWRRFWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 489
W + + ++ L PEEHP+LLTE PL N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 490 FNTPAMSLASKPVLSLYA 543
N PA+S + +PVL+LYA
Sbjct: 132 LNVPALSFSLQPVLALYA 149
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 94.3 bits (224), Expect = 1e-20
Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 2/161 (1%)
Frame = +1
Query: 121 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGRRTLM*EMRHRAK 294
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + + +M A
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 295 XXXXXXXXXXXXXXXLTGMTWRRFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 474
+ W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 475 IMFETFNTPAMSLASKPVLSLYAFRSFHRYRAWTSGDGVFH 597
MFE + + +A + VLSLYA + SGDGV H
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYA-QGLSSGVVVDSGDGVTH 161
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/58 (34%), Positives = 35/58 (60%)
Frame = +3
Query: 237 RDGRYGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKILASYLLQ*AACRPRG 410
+ G KD VGDEA++ R +L +KYP+E+GI+ ++++M ++ + PRG
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRG 100
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 67.7 bits (158), Expect = 1e-12
Identities = 38/86 (44%), Positives = 50/86 (58%), Gaps = 7/86 (8%)
Frame = +1
Query: 361 RFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMSLASKPVLSLY 540
RFW + + LR PE+H LLTE PLNP NRE +IMFE+FN + +A + VL+L
Sbjct: 107 RFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALA 166
Query: 541 AFRSFHRY--RAWT-----SGDGVFH 597
A + + R+ T SGDGV H
Sbjct: 167 ASWTSSKVTDRSLTGTVVDSGDGVTH 192
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +1
Query: 133 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 216
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 261 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKILASYLLQ*AACRP 404
D ++G++A K +L YPI HG + NWD ME+ L + C P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEP 121
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 67.3 bits (157), Expect = 2e-12
Identities = 43/142 (30%), Positives = 65/142 (45%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRRTLM*EMRHRAKX 297
+EV+A+V+D GS + GF+G+D P+ V PS G GRR E +++
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGE-------FSDGRRLFGEEYIYKSNP 61
Query: 298 XXXXXXXXXXXXXXLTGMTWRRFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 477
+T W + +L+ P EHP+L+TE NP NR K +
Sbjct: 62 GMEIKNAIRNGWVENWDVTVD-LWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 478 MFETFNTPAMSLASKPVLSLYA 543
MFE+ PA LA + + +A
Sbjct: 121 MFESLRCPATYLAKQETCAAFA 142
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 54.4 bits (125), Expect = 1e-08
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 3/139 (2%)
Frame = +1
Query: 133 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM---VGMGRRTLM*EMRHRAKXXX 303
LV+DNGS +AG+ G+ P+ VF ++V R R + + +G TL+ E+ R+
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRKLSRTSTLVGNDTLI-EVGSRSIARS 85
Query: 304 XXXXXXXXXXXXLTGMTWRRFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 483
+ + +TF +L + EHP+ +TE NP R MT+++F
Sbjct: 86 PFERNVISNWDLM-----EQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLF 139
Query: 484 ETFNTPAMSLASKPVLSLY 540
E +N P+++ + S Y
Sbjct: 140 ELYNAPSVAYGIDGLFSFY 158
Score = 31.1 bits (67), Expect = 0.14
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +3
Query: 237 RDGRYGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIL 368
RD + + + VG++ + G ++ + P E +++NWD ME++L
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVL 102
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 53.2 bits (122), Expect = 3e-08
Identities = 34/142 (23%), Positives = 65/142 (45%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRRTLM*EMRHRAKX 297
EE+ +LV+D GS + G+AG+++P + PS G + + G + + E++ A
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYGV---RSDVTGRNKYVVD-ELQIHAPI 63
Query: 298 XXXXXXXXXXXXXXLTGMTWRRFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 477
+ W +L+V P E+ +++TE NP++ R+++ +
Sbjct: 64 PGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEA 123
Query: 478 MFETFNTPAMSLASKPVLSLYA 543
FE + PA L + V +A
Sbjct: 124 AFEQLHVPAFYLTKQAVCVAFA 145
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.5 bits (68), Expect = 0.10
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +1
Query: 379 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTP 501
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 28.7 bits (61), Expect = 0.73
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -1
Query: 350 IPVSDDSVFDGVFEGQDTSFALCLISYIRVLLPIPTITP*WRGLPTIEGNTARGASSPAK 171
+P + +V +TSFAL S L PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 170 PALHIP 153
P L+ P
Sbjct: 123 PQLNSP 128
>SPCC1442.07c |||ubiquitin/metalloprotease fusion
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 282
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 288 SVPHLLHKSPSAHTDHHALMAGPSHDRGKH 199
+VP L P+ HT H + G +H++G H
Sbjct: 148 TVPLLSEMDPAEHTRHDSKTLGLNHNQGAH 177
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = -1
Query: 614 RRWARVWKTPSPE---VQARYRWNDRNAYSESTGLDANDMAGVLNVSNMI 474
+ W +W+ P P+ + Y +N S T D ND A + +M+
Sbjct: 347 KEWCHLWEQPEPQYSRIAYFYSYNVVYEASIQTATDGNDFANIPRYVSMV 396
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/77 (20%), Positives = 33/77 (42%)
Frame = +1
Query: 394 RVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMSLASKPVLSLYAFRSFHRYRAW 573
R++P LL L+ + + + + + ++ + + SL S ++ +W
Sbjct: 184 RLSPSSLVPLLKLPALDHAVSSSSSSDLPSDPNSASYIASSKQKASSLKLTSSLKKFYSW 243
Query: 574 TSGDGVFHTRAHLRRDT 624
TS + HTR +L T
Sbjct: 244 TSSSSLQHTRENLHDST 260
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -1
Query: 248 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 114
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 421 LLTEAPLNPKANREKMTQIMFETFN 495
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 254 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 162
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 160 TYRSHCLLPTRQLLRRTS*ISEI 92
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 585 VAGSPSTIPVERPERV 538
V+GSPS P+ +PE+V
Sbjct: 755 VSGSPSETPISKPEKV 770
>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 218
Score = 25.0 bits (52), Expect = 9.0
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = -1
Query: 599 VWKTPSPEVQARYRWNDRNAYSES 528
+W PE++A WN +ES
Sbjct: 175 IWAISEPELEAEIAWNTTQGITES 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,013
Number of Sequences: 5004
Number of extensions: 61656
Number of successful extensions: 180
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -