Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0058
(629 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 214 6e-56
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 209 1e-54
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 209 1e-54
SB_56| Best HMM Match : Actin (HMM E-Value=0) 208 4e-54
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 206 9e-54
SB_54| Best HMM Match : Actin (HMM E-Value=0) 86 6e-29
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 5e-22
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 83 2e-16
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 71 1e-12
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 51 7e-07
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 49 3e-06
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 37 0.012
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 37 0.012
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.063
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.58
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42) 28 5.4
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 28 7.2
SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06) 27 9.5
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_49523| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-37) 27 9.5
SB_18995| Best HMM Match : rve (HMM E-Value=0.0012) 27 9.5
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 214 bits (522), Expect = 6e-56
Identities = 108/164 (65%), Positives = 118/164 (71%)
Frame = +1
Query: 109 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRRTLM*EMRHR 288
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG++ +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 289 AKXXXXXXXXXXXXXXXLTGMTWRRFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 468
+K + WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 469 TQIMFETFNTPAMSLASKPVLSLYAFRSFHRYRAWTSGDGVFHT 600
TQIMFETFN+PAM +A + VLSLYA SGDGV HT
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGI-VMDSGDGVTHT 163
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 209 bits (511), Expect = 1e-54
Identities = 107/164 (65%), Positives = 117/164 (71%)
Frame = +1
Query: 109 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRRTLM*EMRHR 288
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG++ +
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 289 AKXXXXXXXXXXXXXXXLTGMTWRRFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 468
+K + WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 469 TQIMFETFNTPAMSLASKPVLSLYAFRSFHRYRAWTSGDGVFHT 600
TQIMFETFN+PAM +A + VLSLYA SGDGV HT
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGI-VMDSGDGVTHT 163
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 209 bits (511), Expect = 1e-54
Identities = 105/164 (64%), Positives = 117/164 (71%)
Frame = +1
Query: 109 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRRTLM*EMRHR 288
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG++ +
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 289 AKXXXXXXXXXXXXXXXLTGMTWRRFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 468
+K + WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 469 TQIMFETFNTPAMSLASKPVLSLYAFRSFHRYRAWTSGDGVFHT 600
TQIMFETFN+PAM +A + VLSLYA SGDGV HT
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGI-VMDSGDGVSHT 163
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 208 bits (507), Expect = 4e-54
Identities = 106/162 (65%), Positives = 116/162 (71%)
Frame = +1
Query: 115 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRRTLM*EMRHRAK 294
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG++ ++K
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 295 XXXXXXXXXXXXXXXLTGMTWRRFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 474
+ WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 475 IMFETFNTPAMSLASKPVLSLYAFRSFHRYRAWTSGDGVFHT 600
IMFETFN+PAM +A + VLSLYA SGDGV HT
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGI-VMDSGDGVTHT 162
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 206 bits (504), Expect = 9e-54
Identities = 105/162 (64%), Positives = 116/162 (71%)
Frame = +1
Query: 115 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRRTLM*EMRHRAK 294
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG++ ++K
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 295 XXXXXXXXXXXXXXXLTGMTWRRFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 474
+ WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 475 IMFETFNTPAMSLASKPVLSLYAFRSFHRYRAWTSGDGVFHT 600
IMFETFN+PAM +A + VLSLYA SGDGV HT
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGI-VMDSGDGVTHT 162
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 85.8 bits (203), Expect(2) = 6e-29
Identities = 43/87 (49%), Positives = 56/87 (64%)
Frame = +1
Query: 340 LTGMTWRRFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMSLAS 519
+ G + W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P M +A
Sbjct: 2123 IVGRPRHKMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAV 2181
Query: 520 KPVLSLYAFRSFHRYRAWTSGDGVFHT 600
+ V++LYA + GDGV HT
Sbjct: 2182 QAVMALYA-SGRTTGTVFDCGDGVSHT 2207
Score = 59.7 bits (138), Expect(2) = 6e-29
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +1
Query: 133 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 234
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 101 bits (242), Expect = 5e-22
Identities = 44/49 (89%), Positives = 49/49 (100%)
Frame = +1
Query: 115 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRR 261
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG++
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 50
Score = 86.6 bits (205), Expect = 1e-17
Identities = 38/39 (97%), Positives = 39/39 (100%)
Frame = +3
Query: 252 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIL 368
GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI+
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIM 86
Score = 45.6 bits (103), Expect = 3e-05
Identities = 26/49 (53%), Positives = 31/49 (63%)
Frame = +1
Query: 454 NREKMTQIMFETFNTPAMSLASKPVLSLYAFRSFHRYRAWTSGDGVFHT 600
N + M +IMFETFN+PAM +A + VLSLYA SGDGV HT
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGI-VMDSGDGVTHT 125
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 82.6 bits (195), Expect = 2e-16
Identities = 53/160 (33%), Positives = 77/160 (48%), Gaps = 3/160 (1%)
Frame = +1
Query: 127 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGRRTLM*EMRHRAKXX 300
+ +V DNG+G K G+AG + P +FPS+VGRP R + + + LM
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 301 XXXXXXXXXXXXXLTGMTWRRFWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQI 477
+ W +TF +++ + P VLLTE PLNP NREKM ++
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 478 MFETFNTPAMSLASKPVLSLYAFRSFHRYRAWTSGDGVFH 597
MFE + + +A + VL+LYA + SGDGV H
Sbjct: 127 MFENYQFEGVYIAIQAVLTLYA-QGLLTGVVIDSGDGVTH 165
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +3
Query: 258 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 365
KD VGDEA R +L + YP+++GIV NWDDM+ +
Sbjct: 53 KDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHV 88
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 70.5 bits (165), Expect = 1e-12
Identities = 34/64 (53%), Positives = 44/64 (68%)
Frame = +1
Query: 409 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMSLASKPVLSLYAFRSFHRYRAWTSGDG 588
+HPVLLTEAPLNP+ NREK ++ FETFN PA+ ++ + VLSLYA +GDG
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGV-VLDAGDG 184
Query: 589 VFHT 600
V H+
Sbjct: 185 VSHS 188
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 234
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 51.2 bits (117), Expect = 7e-07
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +1
Query: 103 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 249
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/44 (45%), Positives = 30/44 (68%)
Frame = +1
Query: 412 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMSLASKPVLSLYA 543
HP+L++EA N + REK+T++MFE +N PA L VL+ +A
Sbjct: 34 HPLLMSEAAWNTRIKREKLTELMFEKYNVPAFFLCKNSVLTAFA 77
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/41 (51%), Positives = 26/41 (63%)
Frame = +1
Query: 475 IMFETFNTPAMSLASKPVLSLYAFRSFHRYRAWTSGDGVFH 597
IMFE FN+PA+ +A + VLSLYA + SGDGV H
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGV-VFDSGDGVSH 40
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +3
Query: 261 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEK 362
D ++GDEA K T K+PI H IV +WD ME+
Sbjct: 283 DFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMER 315
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 34.7 bits (76), Expect = 0.063
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = -3
Query: 231 MAGPSHDRGKHCARSIISCEAGLAHTGAIVYYQRGNFFV 115
MA + D G++ + SI+S E GLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 206 GNTARGASSPAKPALHIPEPLSTT 135
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 206 GNTARGASSPAKPALHIPEPLSTT 135
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 206 GNTARGASSPAKPALHIPEPLSTT 135
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 427 TEAPLNPKANREKMTQIMFETFNTPAMSLASK 522
T +P +P N +K T FET NTP +S+A++
Sbjct: 444 TASPRHPTNNTDKATH-KFETRNTPTLSIATE 474
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/45 (28%), Positives = 16/45 (35%)
Frame = -3
Query: 207 GKHCARSIISCEAGLAHTGAIVYYQRGNFFVAHLELVKLVRCRCD 73
G+HC + I C G GA GN+ E C D
Sbjct: 724 GRHCEKDIDECSLGYCKNGATCTNTPGNYSCQCTEFTNGTNCELD 768
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 206 GNTARGASSPAKPALHIPEPLSTT 135
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 206 GNTARGASSPAKPALHIPEPLSTT 135
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
Length = 1078
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -3
Query: 303 GYLFCSVPHLLHKSPSAHTDHHALMAGPSHDRGKHCARSIISCE 172
G C+ + PSA +H AL +GP R + C R + E
Sbjct: 399 GRYACAYCGKIMAKPSALKEHEALHSGPRPHRCRSCKRGFTTAE 442
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 121 EVAALVVDNGSGMCKAGFAGDDAPRAV 201
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06)
Length = 1826
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -3
Query: 573 PST--IPVERPERVQREHGLGCQRHGGRVE 490
PST +P + P R +R GC+ H GR++
Sbjct: 1472 PSTDAVPTDTPSRKKRAIPAGCKDHNGRMK 1501
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 221 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 111
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_49523| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-37)
Length = 366
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 262 SFCPYRPSRPDGGAFPRSRETLREEHHLLRS 170
SFC +R R G F R + TLR H +S
Sbjct: 213 SFCYFRVFRAVGNHFTRVKPTLRSHHRTQQS 243
>SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)
Length = 1225
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 226 GAFPRSRETLREEHHLLRSRPCTYRS 149
G +P S++T R E + +RPCT S
Sbjct: 832 GCYPWSKQTFRHEGPPISARPCTAMS 857
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,309,813
Number of Sequences: 59808
Number of extensions: 557690
Number of successful extensions: 1668
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1657
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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