Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0058
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    23   2.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   4.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.3  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   4.3  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   4.3  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   7.5  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   7.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.9  

>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 512 NDMAGVLNVSNMIWVIFSLLALGLRGAS 429
           N+M   LN+SN+ W+        L GA+
Sbjct: 26  NNMCTSLNLSNLFWLFVGTYFPSLIGAN 53


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 391  LRVAPEEHPVLLTEAPLNPKANREKM 468
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 554 STGIVLGLPATVSSTPVPIYEGI 622
           ++G+V G P TV    V ++ GI
Sbjct: 43  TSGLVRGFPRTVLDKEVHVFYGI 65


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 554 STGIVLGLPATVSSTPVPIYEGI 622
           ++G+V G P TV    V ++ GI
Sbjct: 43  TSGLVRGFPRTVLDKEVHVFYGI 65


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 219 KAPPSGRDGRYGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDD 353
           K  P G  G  G+K      E   KRG++  +  ++    T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 219 KAPPSGRDGRYGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDD 353
           K  P G  G  G+K      E   KRG++  +  ++    T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 63  IKRPAVTANREKQIPIAGR 7
           IK P + ANR K   IAG+
Sbjct: 284 IKLPKLAANRAKLEEIAGK 302


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 154 GMCKAGFAGD 183
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 288 SVPHLLHKSPSAHTDHHA 235
           + PH  H +P AH+ + A
Sbjct: 438 ATPHHQHSTPLAHSSYPA 455


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 564 IPVERPERVQREHGLGCQRHGGRVECFEHD 475
           + ++RP+ V +    G +  G  V C E D
Sbjct: 358 LTLQRPQDVDKYPAEGLEMKGQMVHCPESD 387


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,527
Number of Sequences: 438
Number of extensions: 4267
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)