Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0058
(629 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 194 4e-50
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 194 5e-50
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 194 5e-50
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 192 2e-49
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 191 3e-49
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 191 3e-49
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 188 4e-48
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 188 4e-48
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 188 4e-48
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 175 3e-44
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 131 3e-31
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 103 1e-22
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 97 1e-20
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 66 2e-11
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 65 4e-11
At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica... 57 8e-09
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 52 3e-07
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 47 1e-05
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 46 2e-05
At5g01040.1 68418.m00007 laccase family protein / diphenol oxida... 36 0.017
At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase, put... 28 4.4
At5g56180.2 68418.m07009 actin-related protein, putative (ARP8) ... 28 5.9
At5g56180.1 68418.m07008 actin-related protein, putative (ARP8) ... 28 5.9
At5g06610.1 68418.m00747 expressed protein contains Pfam profile... 27 7.8
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 194 bits (473), Expect = 4e-50
Identities = 100/161 (62%), Positives = 110/161 (68%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRRTLM*EMRHRAKX 297
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMG++ ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 298 XXXXXXXXXXXXXXLTGMTWRRFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 477
+ WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 478 MFETFNTPAMSLASKPVLSLYAFRSFHRYRAWTSGDGVFHT 600
MFETFNTPAM +A + VLSLYA SGDGV HT
Sbjct: 125 MFETFNTPAMYVAIQAVLSLYASGRTTGI-VLDSGDGVSHT 164
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 194 bits (472), Expect = 5e-50
Identities = 100/161 (62%), Positives = 110/161 (68%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRRTLM*EMRHRAKX 297
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMG++ ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 298 XXXXXXXXXXXXXXLTGMTWRRFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 477
+ WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 478 MFETFNTPAMSLASKPVLSLYAFRSFHRYRAWTSGDGVFHT 600
MFETFNTPAM +A + VLSLYA SGDGV HT
Sbjct: 125 MFETFNTPAMYVAIQAVLSLYASGRTTGI-VLDSGDGVSHT 164
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 194 bits (472), Expect = 5e-50
Identities = 100/161 (62%), Positives = 110/161 (68%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRRTLM*EMRHRAKX 297
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMG++ ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 298 XXXXXXXXXXXXXXLTGMTWRRFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 477
+ WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 478 MFETFNTPAMSLASKPVLSLYAFRSFHRYRAWTSGDGVFHT 600
MFETFNTPAM +A + VLSLYA SGDGV HT
Sbjct: 125 MFETFNTPAMYVAIQAVLSLYASGRTTGI-VLDSGDGVSHT 164
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 192 bits (468), Expect = 2e-49
Identities = 99/161 (61%), Positives = 109/161 (67%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRRTLM*EMRHRAKX 297
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMG++ ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 298 XXXXXXXXXXXXXXLTGMTWRRFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 477
+ WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 65 GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 478 MFETFNTPAMSLASKPVLSLYAFRSFHRYRAWTSGDGVFHT 600
MFETFN PAM +A + VLSLYA SGDGV HT
Sbjct: 125 MFETFNVPAMYVAIQAVLSLYASGRTTGI-VLDSGDGVSHT 164
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 191 bits (466), Expect = 3e-49
Identities = 98/161 (60%), Positives = 109/161 (67%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRRTLM*EMRHRAKX 297
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMG++ ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 298 XXXXXXXXXXXXXXLTGMTWRRFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 477
+ WHHTFYNELRVAPEEHP+LLTEAPLNPKANREKMTQI
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQI 124
Query: 478 MFETFNTPAMSLASKPVLSLYAFRSFHRYRAWTSGDGVFHT 600
MFETFN PAM +A + VLSLYA SGDGV HT
Sbjct: 125 MFETFNAPAMYVAIQAVLSLYASGRTTGI-VLDSGDGVSHT 164
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 191 bits (466), Expect = 3e-49
Identities = 98/161 (60%), Positives = 109/161 (67%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRRTLM*EMRHRAKX 297
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMG++ ++K
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR 64
Query: 298 XXXXXXXXXXXXXXLTGMTWRRFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 477
+ WHHTFYNELRVAPEEHP+LLTEAPLNPKANREKMTQI
Sbjct: 65 GILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQI 124
Query: 478 MFETFNTPAMSLASKPVLSLYAFRSFHRYRAWTSGDGVFHT 600
MFETFN PAM +A + VLSLYA SGDGV HT
Sbjct: 125 MFETFNAPAMYVAIQAVLSLYASGRTTGI-VLDSGDGVSHT 164
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 188 bits (457), Expect = 4e-48
Identities = 94/161 (58%), Positives = 109/161 (67%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRRTLM*EMRHRAKX 297
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM ++ ++K
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 298 XXXXXXXXXXXXXXLTGMTWRRFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 477
+ WHHTFYNELR+APEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 478 MFETFNTPAMSLASKPVLSLYAFRSFHRYRAWTSGDGVFHT 600
MFETFN+PAM +A + VLSLYA SGDGV HT
Sbjct: 125 MFETFNSPAMYVAIQAVLSLYASGRTTGI-VLDSGDGVSHT 164
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 188 bits (457), Expect = 4e-48
Identities = 94/161 (58%), Positives = 109/161 (67%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRRTLM*EMRHRAKX 297
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM ++ ++K
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 298 XXXXXXXXXXXXXXLTGMTWRRFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 477
+ WHHTFYNELR+APEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 478 MFETFNTPAMSLASKPVLSLYAFRSFHRYRAWTSGDGVFHT 600
MFETFN+PAM +A + VLSLYA SGDGV HT
Sbjct: 125 MFETFNSPAMYVAIQAVLSLYASGRTTGI-VLDSGDGVSHT 164
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 188 bits (457), Expect = 4e-48
Identities = 94/161 (58%), Positives = 109/161 (67%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRRTLM*EMRHRAKX 297
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM ++ ++K
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKR 64
Query: 298 XXXXXXXXXXXXXXLTGMTWRRFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 477
+ WHHTFYNELR+APEEHPVLLTEAPLNPKANREKMTQI
Sbjct: 65 GILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQI 124
Query: 478 MFETFNTPAMSLASKPVLSLYAFRSFHRYRAWTSGDGVFHT 600
MFETFN+PAM +A + VLSLYA SGDGV HT
Sbjct: 125 MFETFNSPAMYVAIQAVLSLYASGRTTGI-VLDSGDGVSHT 164
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 175 bits (425), Expect = 3e-44
Identities = 88/161 (54%), Positives = 104/161 (64%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRRTLM*EMRHRAKX 297
+E A+V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH+GVMVGM + +A+
Sbjct: 6 DESVAIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHRGVMVGMDEKDTFVGDEAQARR 65
Query: 298 XXXXXXXXXXXXXXLTGMTWRRFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 477
+ WHHTFYNELR+ PEEHP+LLTEAPLNPK NREKMTQI
Sbjct: 66 GILSLKYPIEHGVVSNWDDMEKIWHHTFYNELRLEPEEHPILLTEAPLNPKVNREKMTQI 125
Query: 478 MFETFNTPAMSLASKPVLSLYAFRSFHRYRAWTSGDGVFHT 600
MFE+F P+M + + VLSLY+ SGDGV HT
Sbjct: 126 MFESFAFPSMYIGIQAVLSLYSSGRTTGI-VLDSGDGVSHT 165
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 131 bits (317), Expect = 3e-31
Identities = 68/137 (49%), Positives = 82/137 (59%)
Frame = +1
Query: 133 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRRTLM*EMRHRAKXXXXXX 312
+V D G GM +AGFAGD+AP+ VFP +VGRPR G+ A
Sbjct: 4 IVCDKGHGMVQAGFAGDEAPKVVFPCVVGRPRD-----GLNPNESYVGEEGHANRDILTL 58
Query: 313 XXXXXXXXXLTGMTWRRFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 492
+ WH+TFYNELRV PEEHPVLLTEAP NPKANREKMTQIMFE+F
Sbjct: 59 KDPMEHGIVNNWDDMEKIWHYTFYNELRVDPEEHPVLLTEAPYNPKANREKMTQIMFESF 118
Query: 493 NTPAMSLASKPVLSLYA 543
+ PAM ++ + VL LY+
Sbjct: 119 DVPAMYVSMQSVLYLYS 135
Score = 60.9 bits (141), Expect = 7e-10
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = +3
Query: 237 RDGRYGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 365
RDG +SYVG+E + R ILTLK P+EHGIV NWDDMEKI
Sbjct: 35 RDG-LNPNESYVGEEGHANRDILTLKDPMEHGIVNNWDDMEKI 76
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +2
Query: 545 SGRSTGIVLGLPATVSSTPVPIYEG 619
SGR+TG+VL L VS T VP+YEG
Sbjct: 136 SGRTTGVVLDLGERVSHT-VPVYEG 159
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 103 bits (246), Expect = 1e-22
Identities = 50/77 (64%), Positives = 58/77 (75%)
Frame = +1
Query: 361 RFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMSLASKPVLSLY 540
+ W+HTFY+ELRVAPEEHPVLLTEAPLNPKA+REKMTQIMFETF P+M + + LSL+
Sbjct: 41 KIWYHTFYSELRVAPEEHPVLLTEAPLNPKADREKMTQIMFETFAVPSMYIGMQAALSLH 100
Query: 541 AFRSFHRYRAWTSGDGV 591
A SGDGV
Sbjct: 101 A-SGRTTGTVLDSGDGV 116
Score = 63.3 bits (147), Expect = 1e-10
Identities = 24/37 (64%), Positives = 33/37 (89%)
Frame = +3
Query: 255 QKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 365
+ D +VGD+A+++ GILTL YP+EHG+V+NWDDMEKI
Sbjct: 6 ENDLFVGDDAEARSGILTLDYPMEHGVVSNWDDMEKI 42
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 96.7 bits (230), Expect = 1e-20
Identities = 57/162 (35%), Positives = 85/162 (52%), Gaps = 7/162 (4%)
Frame = +1
Query: 133 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGRRTLM*-----EMRHRA 291
+V DNG+G K GFAG++ P +VFP +VGRP R++ ++ + ++ E+RH+
Sbjct: 7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVGETCSELRHQL 66
Query: 292 KXXXXXXXXXXXXXXXLTGMTWRRFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 471
+ W H FYNEL++ P + +LLT+ PLNP NREKM
Sbjct: 67 DINYPVHNGIVQNWDDM-----EHVWDHAFYNELKINPSDCKILLTDPPLNPSKNREKMI 121
Query: 472 QIMFETFNTPAMSLASKPVLSLYAFRSFHRYRAWTSGDGVFH 597
+ MFE +N + + + VL+LYA + SGDGV H
Sbjct: 122 ETMFEKYNFAGVFIQIQAVLTLYA-QGLLTGLVIDSGDGVTH 162
Score = 41.9 bits (94), Expect = 3e-04
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +3
Query: 258 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 365
KD VG+ R L + YP+ +GIV NWDDME +
Sbjct: 51 KDIVVGETCSELRHQLDINYPVHNGIVQNWDDMEHV 86
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 65.7 bits (153), Expect = 2e-11
Identities = 27/59 (45%), Positives = 38/59 (64%)
Frame = +1
Query: 367 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMSLASKPVLSLYA 543
W H F + L + P EHP+LL E PLN + REK ++MFE + PA+ +A PVL+ +A
Sbjct: 110 WEHAFKSCLMIDPTEHPMLLAEPPLNTQQQREKAAELMFEKYKVPALFMAKNPVLTSFA 168
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/34 (67%), Positives = 31/34 (91%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 219
+EV+A+VVD GS CKAG+AG+DAP+AVFPS++G
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIG 38
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +3
Query: 267 YVGDEAQS-KRGILTLKYPIEHGIVTNWDDMEKI 365
YVG +A S +R + + PI+ GIV++WD ++ I
Sbjct: 76 YVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNI 109
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 64.9 bits (151), Expect = 4e-11
Identities = 29/61 (47%), Positives = 39/61 (63%)
Frame = +1
Query: 361 RFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMSLASKPVLSLY 540
R+W +N LR PE+H LLTE+PL P +RE +I+FETFN P + +A VL+L
Sbjct: 103 RYWQQCIFNYLRCDPEDHYFLLTESPLTPPESREYTGEILFETFNVPGLYIAVNSVLALA 162
Query: 541 A 543
A
Sbjct: 163 A 163
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +3
Query: 261 DSYVGDEAQSK-RGILT--LKYPIEHGIVTNWDDMEKILASYLLQ*AACRP 404
D Y+GDEA +K R T L YPIEHG V +WD ME+ + C P
Sbjct: 67 DFYIGDEALAKSRSSSTHNLHYPIEHGQVEDWDAMERYWQQCIFNYLRCDP 117
Score = 35.9 bits (79), Expect = 0.022
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 130 ALVVDNGSGMCKAGFAGDDAPRAVFPSIV 216
A+V+DNG+G K GFAG+ P + P++V
Sbjct: 8 AIVIDNGTGYTKMGFAGNVEPCFILPTVV 36
>At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical
to actin-related protein 5 (ARP5) GI:21489922 from
[Arabidopsis thaliana]
Length = 145
Score = 57.2 bits (132), Expect = 8e-09
Identities = 24/34 (70%), Positives = 31/34 (91%)
Frame = +1
Query: 118 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 219
+EV+A+VVD GS CKAG+AG+DAP+AVFPS+VG
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVG 38
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/33 (54%), Positives = 21/33 (63%)
Frame = +1
Query: 367 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 465
W H F N L + P EHP+LL E PLN + REK
Sbjct: 104 WDHAFRNCLMIDPTEHPMLLAEPPLNSQQQREK 136
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 240 DGRYGQKDSYVGDEAQS-KRGILTLKYPIEHGIVTNWDDMEKI 365
D G++ Y G +A + +R + + P + GIVT+WD ++ +
Sbjct: 61 DKEKGKRKLYTGSQALNFRRDQMEILSPTKDGIVTDWDMVDNV 103
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 52.0 bits (119), Expect = 3e-07
Identities = 32/128 (25%), Positives = 55/128 (42%)
Frame = +1
Query: 133 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGRRTLM*EMRHRAKXXXXXX 312
+V+DNG G+ KAG G+ P V P+ + +P + T + +
Sbjct: 5 VVLDNGGGLIKAGQGGERDPTTVIPNCLYKPLSSKKFIHPSPLTTLSD---EIDLTSAAV 61
Query: 313 XXXXXXXXXLTGMTWRRFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 492
+ R W H F + L +AP +LLTEAPL+ + + +++FE F
Sbjct: 62 RRPIDRGYLINSDLQREIWSHLFTSLLHIAPSSSSLLLTEAPLSIPSVQRTTDELVFEDF 121
Query: 493 NTPAMSLA 516
++ +A
Sbjct: 122 GFSSLYIA 129
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 46.8 bits (106), Expect = 1e-05
Identities = 43/143 (30%), Positives = 57/143 (39%), Gaps = 5/143 (3%)
Frame = +1
Query: 130 ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGRPRHQGVMVGMGRRTLM*EMR----HRAK 294
ALVVD GS KAG A D +P + PS + R G T+ ++ R
Sbjct: 3 ALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKRMVDDGSSSADNPTTVFEDVTLDPIERGL 62
Query: 295 XXXXXXXXXXXXXXXLTGMTWRRFWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 474
TG+ W E +L T+ PKA RE++ Q
Sbjct: 63 IRDWDAMEDLLRYVVYTGLGWEE-------------GNEGNILFTDPLCTPKAIREQLVQ 109
Query: 475 IMFETFNTPAMSLASKPVLSLYA 543
+MFETFN + + VLSLYA
Sbjct: 110 LMFETFNVSGFYASEQAVLSLYA 132
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 46.0 bits (104), Expect = 2e-05
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 409 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMSLASKPVLSLYAFRSFH 558
+HP+L+TE NP +R KM +++FET+ PA++ S Y + H
Sbjct: 116 DHPILITECACNPVQSRSKMAELLFETYGVPAVAFGVDAAFS-YKYNQLH 164
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +1
Query: 133 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 234
+V+DNG+ + G+AG+ PR VF +IV RPRH+
Sbjct: 22 IVIDNGASYFRIGWAGETEPRVVFRNIVQRPRHK 55
>At5g01040.1 68418.m00007 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201], lac110 laccase, Populus
trichocarpa, EMBL:PTY13773
Length = 584
Score = 36.3 bits (80), Expect = 0.017
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = -1
Query: 293 FALCLISYIRVL-LPIPTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSS 117
+ + + YI + +P P I P RGL +G T+ +SSPA+P + +P +ST + TS+
Sbjct: 276 YYMATLPYISAIGIPTPDIKP-TRGLIVYQGATS--SSSPAEPLMPVPNDMSTAHRFTSN 332
>At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase,
putative / 3-PGDH, putative similar to SP:O04130 from
[Arabidopsis thaliana]
Length = 588
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -2
Query: 370 AKIFSMSSQLVTIPCSMGYLRVRIPLLLCASS 275
+ IFS SS+LVT P S+ +R R ++L SS
Sbjct: 8 SSIFSSSSRLVTTPSSVFPIRQRRRIILVTSS 39
>At5g56180.2 68418.m07009 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 387
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Frame = +1
Query: 376 TFYNELRVAPEEHPVLLTEAPL-------NPKANREKMTQIMFETF---NTPAMSLASKP 525
T + ++V P P++++ PL + KA+R ++ +F N PA+ ++
Sbjct: 182 TIFTRMQVKPSMQPIVVS-LPLCHFDDTESAKASRRQLKTAIFNVLFDMNVPAVCAVNQA 240
Query: 526 VLSLYAFR 549
VL+LYA R
Sbjct: 241 VLALYAAR 248
>At5g56180.1 68418.m07008 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 471
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Frame = +1
Query: 376 TFYNELRVAPEEHPVLLTEAPL-------NPKANREKMTQIMFETF---NTPAMSLASKP 525
T + ++V P P++++ PL + KA+R ++ +F N PA+ ++
Sbjct: 182 TIFTRMQVKPSMQPIVVS-LPLCHFDDTESAKASRRQLKTAIFNVLFDMNVPAVCAVNQA 240
Query: 526 VLSLYAFR 549
VL+LYA R
Sbjct: 241 VLALYAAR 248
>At5g06610.1 68418.m00747 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 368
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 230 WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSHI 108
WR P + + A+GA P + AL +PL+ ++ +S+ +
Sbjct: 167 WRYTPWLGDHAAKGAIRPLRRALQGLDPLTISSVFSSAQFV 207
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,731,348
Number of Sequences: 28952
Number of extensions: 361545
Number of successful extensions: 1009
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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