Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0056
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces...    27   1.9  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   2.5  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    25   5.7  
SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.5  
SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual           25   10.0 
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   10.0 

>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 143

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 403 PVTQGPSRCCRGSCATCGW 459
           P  + P  CC+  CA C W
Sbjct: 56  PKPEEPLNCCQSGCAICVW 74


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 120 ITNREACCCKQVKTFCLNQVSKRSARLQCNRRAVACSRAQGEWPP 254
           I++      K+++   L Q+S+ ++R   NRR    S A+  W P
Sbjct: 81  ISSNVMAASKRLQMEDLQQLSRETSRKSLNRRVSFASHARVRWYP 125


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
 Frame = +1

Query: 175 KFRSGLRDCSAIGGPSRAHVR---RASGRQHYTCFKRIY-YNCEIGIVSIKFRSRWSYLT 342
           +F S L+      GP + ++        R+HY+    IY ++C  GI +  FR+  SY+ 
Sbjct: 36  RFASFLKKLELSSGPEKENIDLRPTPPDRRHYSALDIIYLWSCN-GISASAFRTGTSYM- 93

Query: 343 EPGCCDLRGFDADLRFSV--ALPVT 411
           E G    +   A +  +V  A+P+T
Sbjct: 94  EMGLSPKQALAALIAGNVFIAMPMT 118


>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 505 SVCFWVSSSSARISGSTHMSRKILCSI 425
           + C+W S  SAR+ G+  + R+ L ++
Sbjct: 165 ATCWWTSKESARLGGAGKIHREGLKAV 191


>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 312

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 479 FGQDLGIHPHVAQDPLQHLDGP 414
           F   +G+HP  AQ  L+H +GP
Sbjct: 78  FTSTVGVHPCQAQCFLRHSEGP 99


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 376 HQNLSSHSIPAPSNK 332
           ++NL +H IPAP NK
Sbjct: 416 NRNLHTHKIPAPLNK 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,840
Number of Sequences: 5004
Number of extensions: 43459
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)